View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_high_16 (Length: 505)
Name: NF17408_high_16
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_high_16 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 5 - 505
Target Start/End: Complemental strand, 8353032 - 8352534
Alignment:
| Q |
5 |
tagattggggggttctcttctgagaacaaatctttaataggaccataaatctttgatgaagctttatctagatcatgggaagttccaaagaaggcagcta |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8353032 |
tagattggggggttctcttctgagaacaaatctttaataggaccataaatctttgatgaagctttatctagatcatgggaagttccaaagaaggcagcta |
8352933 |
T |
|
| Q |
105 |
cagaaactcttgggcctttatgatttgataacacccgatgataaacgctactgaaattgtcatttgatacaagctgtatgattaacaaataaattgatat |
204 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8352932 |
cagaaactcttgggcctttatgatttgataacacacgatgataaacactactgaaattgtcatttgatacaagctgtatgattaacaaataaattgatat |
8352833 |
T |
|
| Q |
205 |
aagtatatagttgttacaatgctatctaattaactatgaagtctgacagtaatttcaatttttctccaaaatttagggnnnnnnnngtgtgttaatcctc |
304 |
Q |
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| T |
8352832 |
aagtatatagtcgttacaatgttatctaattaactatgaagtctgacagtaatttcaatttttctccaaaatttagggtttttttt-tgtgttaatcctc |
8352734 |
T |
|
| Q |
305 |
tagctctaaagaaaaagggaccctggtatttcagagtttggtcagaggtaaataaagtctaactgaaaattgttccatcaagaattaaagtcaggttctc |
404 |
Q |
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| T |
8352733 |
tagctctaaagaaaaa-ggaccctggtatttcagagtttggtcagaggtaaataaagtctaactgaaaattgttccatcaagaattaaagtcaggttctc |
8352635 |
T |
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| Q |
405 |
tgaaacaatttgtcattggagaagctcgttaacctcttgagctcaattactatattaattcagctcatagaatatggatttgaattgtttgtttatatat |
504 |
Q |
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| T |
8352634 |
tgaaacaatttgtcattggagaagctcgttaacctcttgagctcaattactatattaattcagctcatagaatatggatttgaattgtttgtttatatat |
8352535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 5 - 502
Target Start/End: Original strand, 25221270 - 25221759
Alignment:
| Q |
5 |
tagattggggggttctcttctgagaacaaatctttaataggaccataaatctttgatgaagctttatctagatcatgggaagttccaaagaaggcagcta |
104 |
Q |
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|||||||| |||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
25221270 |
tagattggtgggttctcttctgagaccaattctttaataggaccataaatcattgatgaagctttatcaagatcatgagaagttccaaagaaggcagcta |
25221369 |
T |
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| Q |
105 |
cagaaactcttgggcctttatgatttgataacacccgatgataaacgctactgaaattgtcatttgatacaagctgtatgattaacaaataaattgatat |
204 |
Q |
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| T |
25221370 |
cagaaactcttgggcctttatgatttgatagtacccgatgataaacactactgaaattgtcatttgacacaagctgcacgattaacaaataaattgatat |
25221469 |
T |
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| Q |
205 |
aagtatatagttgttacaatgctatctaattaactatgaagtctgacagtaatttcaatttttctccaaaatttagggnnnnnnnngtgtgttaatcctc |
304 |
Q |
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||||||||||| ||||||||| |||||||||||||||||||| ||| ||||||||||| |||||||||||||| || | | |||| |||| |
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| T |
25221470 |
aagtatatagtcgttacaatgatatctaattaactatgaagtatgatagtaatttcaa-ttttctccaaaattcag-------ttttttttttaaccctc |
25221561 |
T |
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| Q |
305 |
tagctctaaagaaaaa--gggaccctggtatttcagagtttggtcagaggtaaataaagtctaactgaaaattgttccatcaagaattaaagtcaggttc |
402 |
Q |
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|||||||||| ||||| |||| || ||||||||| || |||||||||||||| |||||| | ||| |||| ||||||||||||||| ||||| || ||| |
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| T |
25221562 |
tagctctaaaaaaaaaaggggaacccggtatttcaaagcttggtcagaggtaagtaaagtttgactaaaaactgttccatcaagaatcaaagtgagattc |
25221661 |
T |
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| Q |
403 |
tctgaaacaatttgtcattggagaagctcgttaacctcttgagctcaattactatattaattcagctcatagaatatggatttgaattgtttgtttatat |
502 |
Q |
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| T |
25221662 |
ttcgaaacaattcgtcattgatgaaactcgttaactacttgagctcaattatta-gttaattcagctcattttatatgga-ttgaattgtttatttatat |
25221759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 5 - 505
Target Start/End: Complemental strand, 26173176 - 26172684
Alignment:
| Q |
5 |
tagattggggggttctcttctgagaacaaatctttaataggaccataaatctttgatgaagctttatctagatcatgggaagttccaaagaaggcagcta |
104 |
Q |
| |
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|||||||| |||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||| || |||||||| ||| |||||||||||||||||| |
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| T |
26173176 |
tagattggtgggttctcttctgataacaattctttaataggaccataaatcgttgatgaagctttctccagatcatgagaatttccaaagaaggcagcta |
26173077 |
T |
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| Q |
105 |
cagaaactcttgggcctttatgatttgataacacccgatgataaacgctactgaaattgtcatttgatacaagctgt-atgattaacaaataaattgata |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||| | |||||||||||||||||||| |
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| T |
26173076 |
cagaaactcttgggcctttatgatttgataacacccgatgataaacactactaaaattgtcatttgatataagctgtaaagattaacaaataaattgata |
26172977 |
T |
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| Q |
204 |
taagtatatagttgttacaatgctatctaattaactatgaagtctgacagtaatttca-atttttctccaaaatttagggnnnnnnnngtgtgttaatcc |
302 |
Q |
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|||||||||| | ||||||||| |||||||||||||||||| | ||||| |||||||| ||||| | ||||||| | | |||| || |
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| T |
26172976 |
taagtatatattcgttacaatgatatctaattaactatgaattatgacaataatttcatttttttatacaaaatt---------cttttttttttaaccc |
26172886 |
T |
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| Q |
303 |
tctagctctaaagaaaaagggaccctggtatttcagagtttggtcagaggtaaataaagtctaactgaaaattgttccatcaagaattaaagtcaggttc |
402 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||| | ||| |||||||||| ||||| ||| |||||||| || |
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| T |
26172885 |
tctagttctaaagaaaaagggaccctggtatttttgagtttggtcagaggtaaatgaagtatgactaaaaattgttctatcaaaaatcaaagtcagatta |
26172786 |
T |
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| Q |
403 |
tctgaaacaatttgtcattggagaagctcgttaacctcttgagctcaattactatattaattcagctcatagaatatggatttgaattgtttgtttatat |
502 |
Q |
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|| ||| |||| |||||| ||| ||| |||||| ||||| |||||||||| |||||| ||||||| |||| || ||||||||| | ||||||| |
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| T |
26172785 |
tccaaaataattcatcattgatgaaactcattaaccacttgaactcaattacttggttaatttagctcattttatataga-ttgaattgtatatttatat |
26172687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 87 - 213
Target Start/End: Complemental strand, 26397643 - 26397517
Alignment:
| Q |
87 |
ttccaaagaaggcagctacagaaactcttgggcctttatgatttgataacacccgatgataaacgctactgaaattgtcatttgatacaagctgtatgat |
186 |
Q |
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|||||||||| |||||||||||||||||| ||||||| | || ||||||| |||||| |||| || ||||||||||||| || |||||||| || |
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| T |
26397643 |
ttccaaagaaattagctacagaaactcttggtcctttatcacttaataacactcgatgaaaaacactgacaaaattgtcatttgttataagctgtaacat |
26397544 |
T |
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| Q |
187 |
taacaaataaattgatataagtatata |
213 |
Q |
| |
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| T |
26397543 |
tgacaaataaatttctataagtatata |
26397517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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