View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_high_23 (Length: 418)
Name: NF17408_high_23
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 28 - 400
Target Start/End: Original strand, 48441172 - 48441556
Alignment:
| Q |
28 |
attatgtttgtcctctgattttcaggtaaatggatcatagtaattcggagttcgaccgtatgacaaagatagtttgacaaaaaataaaatggttttacac |
127 |
Q |
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| T |
48441172 |
attatgtttaccctatgattttctgggaaatggatcatagtaattcagagtttgaccgtatggcaaagatagtttgacaaaaaatgaaatggttttgcac |
48441271 |
T |
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| Q |
128 |
cgtacacatattgttttcacaactgaatcaaaaaatcatatttaataataaaatttac-----tgatccaatgattaaa--aatatttatcatcaaataa |
220 |
Q |
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| T |
48441272 |
catacacatattattttcacaactgaatcaacaaatcatatttaataataaaatttactaaaattaacttgtgcataaagtaatatttgtcatcaaataa |
48441371 |
T |
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| Q |
221 |
atggtctatttggtttgttttatgaatggggagaacaggtctgtttattaatga--taatannnnnnnaaaaagaatgatgtaatatatttcttcagccc |
318 |
Q |
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| T |
48441372 |
atggtctatttggtttgttttatgaatggggagaactggtctgtttattaatgatgtaatatttttttaaaaagaatgatgtaatatatttcttcagccc |
48441471 |
T |
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| Q |
319 |
attatcgagtgcactttcgataatttaagtttt--attaatgaattt-aaaaataatttcatcaaaaaagtgaggaggggataac |
400 |
Q |
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| T |
48441472 |
attatcgagtgcactttcgataatttaagttgtacattaatgaatttaaaaaataatttcataaaataagtgaggaggggataac |
48441556 |
T |
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