View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_high_24 (Length: 414)
Name: NF17408_high_24
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 391
Target Start/End: Original strand, 8466756 - 8467127
Alignment:
| Q |
18 |
agaatgaagcatctaatctgaattagttatcaatcttttcgcacttgtacctacgttttcttctcttattaaatgaataattaatcttgctcatcatttc |
117 |
Q |
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| T |
8466756 |
agaatgaagcatctaatctgaattagttatcaatcttttcgcacttgtacctacgttttcttctcttaataaatgaataattaatcttgctcatcatttc |
8466855 |
T |
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| Q |
118 |
acttcctatcttatttattgtgnnnnnnnnnnnnnnnnnnccaatgaagctccatcacatacccatctatcttaaataagggcaccatcaatctacctac |
217 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8466856 |
acttcctatcttatttattgtgacacacacacacaca----caatgatgctccatcacatacccatctatcttaaataagggcaccatcaatctacctac |
8466951 |
T |
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| Q |
218 |
ctgctgctctttggctgtcatccatcttattaccttaatgcttcttgtttcatatgttgttgatgattctaccagatatatgtgcacacagatgaattta |
317 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8466952 |
ctgctgccctttggctgtcatccatcttattaccttaatgcttcttgtttcatatgttgttgatgattctaccatatatatgtgcacacagatgaattta |
8467051 |
T |
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| Q |
318 |
gcttaa--agatcttgttcatgtgggcttagcaaagggttgtttacagagtttttttggcattctgtccacctcca |
391 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8467052 |
gcttaactggatcttgttcatgtgggcttagcaaagggttgtttacagagtttttttggcattctgtccacctcca |
8467127 |
T |
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