View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17408_high_25 (Length: 414)

Name: NF17408_high_25

Description: NF17408

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17408_high_25

[»] chr3 (1 HSPs)

Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 360; E-Value: 0

Query Start/End: Original strand, 15 - 414

Target Start/End: Original strand, 14811301 - 14811699

Alignment:

Q	15	aaaatcttgaaaaacggaatcacagtgagatcagagactacataaaatgtaaatgaacagtaagacaaagcaaaccagactacaaaaacgaaacagatac	114	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	14811301	aaaatctttaaaaacggaatcacagtgagatcagagactaaataaa-tgtaaataaacagtaagacaaagcaaaccagactacaaaaacgaaacagatac	14811399	T

Q	115	caaccaatcgagcgggatcaaaacgtggccttttgatctcatcagagcgaagcaaagtcaacccatacttatgaatgagaaagctatcatccattacaac	214	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	14811400	caaccaaccgagcgggatcaaaacgtggccttttgatctcatcagagcgaagcgaagtcaacccatacttatgaatgagaaagctatcatccattacaac	14811499	T

Q	215	ccttgtacccaacctaagcataatcctctttttgttaccagtggcaaaggagccattaacactatcaacaacattgaaagtggtaataacatacactaaa	314	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	14811500	ccttgtacccaacctaagcataatgctctttctgttaccagtggcaaaggagccattaacactatcaacaacattgaaagtggtgataacatacactaaa	14811599	T

Q	315	tgcccgaagaacaaaggtcctaagcggccaacacactaggatgggattgttgcctgaatcttgttgccctacgaacaaaataaacacaatagaatcaaga	414	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	14811600	tgcccgaagaacaaaggtcctaagcggccaacacactaggatgggattgttgcctgaatcttgttgccctacgaacaaaataaacacaatagaatcaaga	14811699	T

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