View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_high_34 (Length: 374)
Name: NF17408_high_34
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 9 - 358
Target Start/End: Complemental strand, 308549 - 308207
Alignment:
| Q |
9 |
agcaaaggtcattacttgttcagtttgagatggatgcatctcttgcaacagaacaaaggttggttgatccgaatatttctatttgatatatttattatta |
108 |
Q |
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| T |
308549 |
agcaatggtcattacttattcagtttgagatggatgcatctcttgcaaaagaacaaaggttggttgatccgaatatttccatttgatatatt----atta |
308454 |
T |
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| Q |
109 |
atgagaagttgagaacaatgaagcttgaaaatatggttcacctttgaaggaatatgaccgacttctttccaagaataatgtccttccttttattaggtga |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
308453 |
atgagaagttgagaacaatgaagcttgaaaatatggttcacctttgaaggcatatgaccgacttctttccaagaataatgtccttccttttattaggtga |
308354 |
T |
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| Q |
209 |
tataatgataatttatcaaaacgaaattcacaa--ttttagtggcaacttgcaaagctgattcgagtgaaacaagtaaaagcacttgctccaacaatcat |
306 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
308353 |
tataatgataatttatcaaaacgaaattcacaatcttttagtggcaacttgcaaagctgattcgagtgaaacaagtaaaagcacttgctccaacaatcat |
308254 |
T |
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| Q |
307 |
aacaacagaaaagaaatgatgtctttggaattacgcaactagttgtcttact |
358 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
308253 |
aacaac-----agaaatgatgtctttggaattacgcaactagttgtcttact |
308207 |
T |
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