View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17408_high_35 (Length: 370)

Name: NF17408_high_35
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17408_high_35
NF17408_high_35
[»] chr4 (6 HSPs)
chr4 (23-357)||(28001685-28002019)
chr4 (217-348)||(18928006-18928135)
chr4 (169-262)||(8900018-8900111)
chr4 (86-131)||(54106548-54106593)
chr4 (86-130)||(22020189-22020233)
chr4 (86-118)||(46543665-46543697)
[»] chr5 (2 HSPs)
chr5 (131-191)||(34579760-34579820)
chr5 (81-118)||(18475313-18475350)
[»] chr2 (5 HSPs)
chr2 (202-279)||(34605056-34605133)
chr2 (144-280)||(17694543-17694679)
chr2 (218-357)||(17824659-17824798)
chr2 (201-281)||(15474097-15474177)
chr2 (86-130)||(23378016-23378060)
[»] chr8 (3 HSPs)
chr8 (145-357)||(25034028-25034241)
chr8 (222-282)||(24121561-24121621)
chr8 (201-262)||(18540901-18540962)
[»] scaffold0294 (1 HSPs)
scaffold0294 (147-357)||(18881-19091)
[»] chr6 (1 HSPs)
chr6 (148-279)||(21352779-21352910)


Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 23 - 357
Target Start/End: Original strand, 28001685 - 28002019
Alignment:
Q  23 gaatgttaaatggatgttttttaaggaccttagatgatacaacttctatgtctgttaaaagagaaaattaatgttttagattcatttaataaatgacgtg 122  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  28001685 gaatgttaaatggacgttttttaaggatcttagatgatacaacttctatttctgttaaaagagaaaattaatgttttagattcatttaataaatgatgtg 28001784  T
Q  123 tgtgatcttgtttcagactgtcctaaagcccaatccagctccactcgggtccgacccgagttcactaagatgacaaatccatacgatggacacaccctaa 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28001785 tgtgatcttgtttcagactgtcctaaagcccaatccagctccactcgggtccgacccgagttcactaagatgacaaatccatacgatggacacaccctaa 28001884  T
Q  223 aatccactagattacggtgcaggtcgatggttacacacgatgtccaagggttgaccacgctcacgctagccgaaagcagctccctagggtccagggttac 322  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28001885 aatccactagattacggtgcaggctgatggttacacacgatgtccaagggttgaccacgctcacgctagtcgaaagcagctccctagggtccagggttac 28001984  T
Q  323 ccatgtccgtaccaacatgtacgattttcaggata 357  Q
    |||||||||||||||||||||||||||||||||||    
T  28001985 ccatgtccgtaccaacatgtacgattttcaggata 28002019  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 217 - 348
Target Start/End: Complemental strand, 18928135 - 18928006
Alignment:
Q  217 ccctaaaatccactagattacggtgcaggtcgatggttacacacgatgtccaagggttgaccacgctcacgctagccgaaagcagctccctagggtccag 316  Q
    |||||||||| || |||||||||||| |||||| ||| |||   || ||||  ||||||||||||| ||| | ||||||| |||||||||  ||  | ||    
T  18928135 ccctaaaatcaaccagattacggtgcgggtcgagggtaacat--gaggtccgggggttgaccacgcccacacaagccgaaggcagctccccgggaccgag 18928038  T
Q  317 ggttacccatgtccgtaccaacatgtacgatt 348  Q
    | ||||||| ||||||||||||| ||||||||    
T  18928037 gattacccacgtccgtaccaacaggtacgatt 18928006  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 262
Target Start/End: Original strand, 8900018 - 8900111
Alignment:
Q  169 gggtccgacccgagttcactaagatgacaaatccatacgatggacacaccctaaaatccactagattacggtgcaggtcgatggttacacacga 262  Q
    ||||||||||||||| |||||||  |||||  |||||   |||| ||||||||||||||||  |||||| ||| ||| ||| ||||||||||||    
T  8900018 gggtccgacccgagtccactaagcagacaataccatatattggaaacaccctaaaatccacccgattacagtgtaggccgagggttacacacga 8900111  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 54106593 - 54106548
Alignment:
Q  86 aaaattaatgttttagattcatttaataaatgacgtgtgtgatctt 131  Q
    |||||| |||||||||||||||| ||||||||| || |||||||||    
T  54106593 aaaatttatgttttagattcattcaataaatgatgtatgtgatctt 54106548  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 22020233 - 22020189
Alignment:
Q  86 aaaattaatgttttagattcatttaataaatgacgtgtgtgatct 130  Q
    |||||| || |||||| |||||||||||||||| |||||||||||    
T  22020233 aaaattcattttttaggttcatttaataaatgatgtgtgtgatct 22020189  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 118
Target Start/End: Complemental strand, 46543697 - 46543665
Alignment:
Q  86 aaaattaatgttttagattcatttaataaatga 118  Q
    ||||||||| |||||||||||||||||||||||    
T  46543697 aaaattaattttttagattcatttaataaatga 46543665  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 34579760 - 34579820
Alignment:
Q  131 tgtttcagactgtcctaaagcccaatccagctccactcgggtccgacccgagttcactaag 191  Q
    ||||||||| ||  |||||||||||||||||||| ||||||||||||||||||||||||||    
T  34579760 tgtttcagattgggctaaagcccaatccagctccgctcgggtccgacccgagttcactaag 34579820  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 18475313 - 18475350
Alignment:
Q  81 aagagaaaattaatgttttagattcatttaataaatga 118  Q
    ||||||||||| || |||||||||||||||||||||||    
T  18475313 aagagaaaatttattttttagattcatttaataaatga 18475350  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 202 - 279
Target Start/End: Complemental strand, 34605133 - 34605056
Alignment:
Q  202 catacgatggacacaccctaaaatccactagattacggtgcaggtcgatggttacacacgatgtccaagggttgacca 279  Q
    |||||||||||||||||||||||||||| |||||||| |||||| ||| |||||| ||||| || |  ||||||||||    
T  34605133 catacgatggacacaccctaaaatccacaagattacgatgcaggccgagggttacgcacgaggttcgggggttgacca 34605056  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 144 - 280
Target Start/End: Complemental strand, 17694679 - 17694543
Alignment:
Q  144 cctaaagcccaatccagctccactcgggtccgacccgagttcactaagatgacaaatccatacgatggacacaccctaaaatccactagattacggtgca 243  Q
    |||||||| |||||| |||| ||||||||| ||| ||||| || ||||  | | |  ||||| ||||||||| |||||||| |||| ||||||||||||     
T  17694679 cctaaagctcaatccggctctactcgggtctgactcgagtccattaagcaggcgacaccatatgatggacacgccctaaaaaccaccagattacggtgcg 17694580  T
Q  244 ggtcgatggttacacacgatgtccaagggttgaccac 280  Q
    || ||| ||||||||| || ||| | ||||| |||||    
T  17694579 ggccgagggttacacatgaggtcaaggggttaaccac 17694543  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 357
Target Start/End: Original strand, 17824659 - 17824798
Alignment:
Q  218 cctaaaatccactagattacggtgcaggtcgatggttacacacgatgtccaagggttgaccacgctcacgctagccgaaagcagctccctagggtccagg 317  Q
    ||||||||| || |||||||||||| | |||| ||||| |||||| |||   || |||||||||| |||    ||||||  |  |||| |||||||  ||    
T  17824659 cctaaaatcaaccagattacggtgcggttcgagggttatacacgaggtctggggattgaccacgcccacaaaggccgaagtccactccttagggtcgtgg 17824758  T
Q  318 gttacccatgtccgtaccaacatgtacgattttcaggata 357  Q
    ||||||||||||| ||||||||||||||||| | ||||||    
T  17824759 gttacccatgtccataccaacatgtacgattgtaaggata 17824798  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 281
Target Start/End: Original strand, 15474097 - 15474177
Alignment:
Q  201 ccatacgatggacacaccctaaaatccactagattacggtgcaggtcgatggttacacacgatgtccaagggttgaccacg 281  Q
    ||||| ||||||||||| | |||||||||  ||||||||| |||| | | ||||||||| || |||| || ||||||||||    
T  15474097 ccatatgatggacacacgcaaaaatccacctgattacggtacaggccaagggttacacatgaggtccgagagttgaccacg 15474177  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 23378060 - 23378016
Alignment:
Q  86 aaaattaatgttttagattcatttaataaatgacgtgtgtgatct 130  Q
    ||||||||| ||||||||||||||| ||||||| || ||||||||    
T  23378060 aaaattaatattttagattcatttattaaatgatgtatgtgatct 23378016  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 357
Target Start/End: Complemental strand, 25034241 - 25034028
Alignment:
Q  145 ctaaagcccaatccagctccactcgggtccgacccgagttcactaagatgacaaatccatacgatggacacaccctaaaatccactagattacggtgcag 244  Q
    |||||||||||||||||||| ||||||   ||||  |||||||||||  ||| |  ||||||||||||||| || |||||||||  | ||| | |||| |    
T  25034241 ctaaagcccaatccagctccgctcggggttgacctaagttcactaagcagacgataccatacgatggacacgccataaaatccatcatattgcagtgcgg 25034142  T
Q  245 gtcg-atggttacacacgatgtccaagggttgaccacgctcacgctagccgaaagcagctccctagggtccagggttacccatgtccgtaccaacatgta 343  Q
    | || | ||| ||||||||| ||| ||||||||||||||  ||||  |||||| | ||||||| | |||  ||| |||| || |||| |||||| | |||    
T  25034141 gccgaaaggtcacacacgatctccgagggttgaccacgcctacgcaggccgaaggtagctccccaaggttgaggtttactcacgtccataccaataagta 25034042  T
Q  344 cgattttcaggata 357  Q
    ||| | ||||||||    
T  25034041 cgactgtcaggata 25034028  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 282
Target Start/End: Original strand, 24121561 - 24121621
Alignment:
Q  222 aaatccactagattacggtgcaggtcgatggttacacacgatgtccaagggttgaccacgc 282  Q
    ||||||||||||||||||||| || ||| ||||||| |  | |||||||||||||||||||    
T  24121561 aaatccactagattacggtgcgggccgagggttacataaaaggtccaagggttgaccacgc 24121621  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 18540962 - 18540901
Alignment:
Q  201 ccatacgatggacacaccctaaaatccactagattacggtgcaggtcgatggttacacacga 262  Q
    ||||| ||||||||| ||||||||||||  |||||||||||| || | | ||||||||||||    
T  18540962 ccatatgatggacacgccctaaaatccatcagattacggtgcgggccaagggttacacacga 18540901  T

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Target: scaffold0294 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 357
Target Start/End: Complemental strand, 19091 - 18881
Alignment:
Q  147 aaagcccaatccagctccactcgggtccgacccgagttcactaagatgacaaatccatacgatggacacaccctaaaatccactagattacggtgcaggt 246  Q
    |||||||||||| ||||  ||||||| | ||| |||| |||||||   || |  |||||||| | ||||| |||||||||||| |||||||||||||||     
T  19091 aaagcccaatccggctctgctcgggttcaacctgagtccactaagcatacgataccatacgacgaacacaacctaaaatccaccagattacggtgcaggc 18992  T
Q  247 cgatggttacacacgatgtccaagggttgaccacgctcacgctagccgaaagcagctccctagggtccagggttacccatgtccgtaccaacatgtacga 346  Q
    | | | |||||| | | || | ||||||||||| || |||||  || ||| | |||| || || ||  ||| |||||||  |||| ||||||| ||||||    
T  18991 caaggtttacactcaaggttcgagggttgaccatgcccacgcaggctgaaggtagcttcccagtgttgaggattacccacatccgcaccaacaagtacga 18892  T
Q  347 ttttcaggata 357  Q
    || ||||||||    
T  18891 ttgtcaggata 18881  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 148 - 279
Target Start/End: Complemental strand, 21352910 - 21352779
Alignment:
Q  148 aagcccaatccagctccactcgggtccgacccgagttcactaagatgacaaatccatacgatggacacaccctaaaatccactagattacggtgcaggtc 247  Q
    ||||||||||| ||||  ||||||||  ||| |||| ||||||   ||| |  ||||||||||||||| ||||||||||||| |||| || || | |  |    
T  21352910 aagcccaatccggctctgctcgggtctaacctgagtccactaaacagacgacaccatacgatggacacgccctaaaatccaccagatcacagtacggacc 21352811  T
Q  248 gatggttacacacgatgtccaagggttgacca 279  Q
    || |||||||||||| |||| || ||||||||    
T  21352810 gaaggttacacacgaggtccgagagttgacca 21352779  T

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