View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_high_40 (Length: 345)
Name: NF17408_high_40
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 53649379 - 53649542
Alignment:
| Q |
1 |
caagttattcagacacttttctacttgttgatcatattagatatatttggataataattagacttagttgaatactatttaaggtacttgttagctataa |
100 |
Q |
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| T |
53649379 |
caagttattcagccactattctacttgttgatcatattagatatatttggataataattagaattagttgaatactatttaaggtacttgttagctataa |
53649478 |
T |
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| Q |
101 |
ttacaagctgattacattagttacatattatggtaatttatattttataaggtgcattctacac |
164 |
Q |
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| T |
53649479 |
ttacaagctgattacattagttacatattatggtaatttatattttataaggtgcattctacac |
53649542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 236 - 335
Target Start/End: Original strand, 53649615 - 53649714
Alignment:
| Q |
236 |
gctggcctttatcttctcatcatatcatccccatcaaactcatgaaggtgtaaataaaaccaatttgagtttggatactaaggatcaaaatattcttgga |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
53649615 |
gctggcctttatcttctcatcatatcatccccatcaaactcatgaaggtgtaaataaaaccaatttgagtttggatactaaggatcaaaatatttttgga |
53649714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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