View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_high_41 (Length: 336)
Name: NF17408_high_41
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_high_41 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 9 - 321
Target Start/End: Complemental strand, 45653400 - 45653088
Alignment:
| Q |
9 |
gtatatattaagattagaacatatatattaatacatacctaacagccaagtggatgaattgatcattggtgaattaaaagttgaaatggaaaatcaaggt |
108 |
Q |
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| T |
45653400 |
gtatatattaagattagaaattatatattattacatacctaacagccatgtggatgaattgatcattggtgagatacaagttgtaatggaaaatcaaggt |
45653301 |
T |
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| Q |
109 |
cttgattttcccttgactgagtttgagtgcaccaaacaacaaattgtacaaagcgttgtcagagccagaattgacccaaacaaatggctcagatggagtc |
208 |
Q |
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| T |
45653300 |
cttgattttcccttgactgagtttgagtgcaccaaacaacaaattgtacaaagtgttgtcagagccagaattgacccaaacaaatggctcagatggagtc |
45653201 |
T |
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| Q |
209 |
ttcacaaactcagatttcaacatggagaaatcaagtgtttcccaaaccggttggacagtgctagctttcgtcaatgcttcagtaaaacgttgaatagctg |
308 |
Q |
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| T |
45653200 |
ttcacaaattcagatttcaacatggagaaatcaagtgtttcccaaaccggttggacagtgctagctttcgtcaatgcttcagtaaaacgttgaatagctg |
45653101 |
T |
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| Q |
309 |
aagttgattcaaa |
321 |
Q |
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| T |
45653100 |
aagttgattcaaa |
45653088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 61 - 297
Target Start/End: Original strand, 40948998 - 40949234
Alignment:
| Q |
61 |
gatgaattgatcattggtgaattaaaagttgaaatggaaaatcaaggtcttgattttcccttgactgagtttgagtgcaccaaacaacaaattgtacaaa |
160 |
Q |
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| T |
40948998 |
gatgaattgatcattggtgagatacaagctgtaattgaaaatcaaggtcttgatattcccttgactgatattcaatgcaagaaatagcaaattgtacaaa |
40949097 |
T |
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| Q |
161 |
gcgttgtcagagccagaattgacccaaacaaatggctcagatggagtcttcacaaactcagatttcaacatggagaaatcaagtgtttcccaaaccggtt |
260 |
Q |
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| T |
40949098 |
gtgctgtcagaacgggaatggacccaaatatatggctgaattgaggcctttacaaaatcagatttcaacattgagaaatcaagtgtttcccaaactggtt |
40949197 |
T |
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| Q |
261 |
ggacagtgctagctttcgtcaatgcttcagtaaaacg |
297 |
Q |
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| T |
40949198 |
ggtcattgctagctctcttccatgcttcaataaaacg |
40949234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 64 - 254
Target Start/End: Original strand, 40744 - 40934
Alignment:
| Q |
64 |
gaattgatcattggtgaattaaaagttgaaatggaaaatcaaggtcttgattttcccttgactgagtttgagtgcaccaaacaacaaattgtacaaagcg |
163 |
Q |
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| T |
40744 |
gaattgatcattggtgagatacaagtagtaatggaaaatcaaagtcttgatattcccttggctgggattcaatgaaataaacaacaaattgtataaagtg |
40843 |
T |
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| Q |
164 |
ttgtcagagccagaattgacccaaacaaatggctcagatggagtcttcacaaactcagatttcaacatggagaaatcaagtgtttcccaaa |
254 |
Q |
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| T |
40844 |
ttgtcgaagttggaattgacccaaacatatggcggagcagtgctcttgataaaatcagatctcaacatggagaaatcaagtgtttgccaaa |
40934 |
T |
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