View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_high_44 (Length: 328)
Name: NF17408_high_44
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_high_44 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 28 - 312
Target Start/End: Complemental strand, 44872662 - 44872378
Alignment:
| Q |
28 |
aataacattgaaatagtgtttttgtgcagattggtatacagtttggagtttttgatatggattctcgttcaccacctcctcatatcaacatagaacctga |
127 |
Q |
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| T |
44872662 |
aataacattgaaatagtgtttttgtgcagattggtatacagtttggagtttttgatatggattctcgttcaccacctcctcatatcaacatagaacctga |
44872563 |
T |
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| Q |
128 |
gtattgtccacaagctgtgtttgaatggtatcgcttaacaggattaaaagatcgtaaagaaagctttagaagaaaggatttggctttgaaagcaaaacaa |
227 |
Q |
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| T |
44872562 |
gtattgtccacaagctgtgtttgaatggtatcgcttaacaggattaaaagatcgtaaagaaagctttagaagaaaggatttggctttgaaagcaaaacaa |
44872463 |
T |
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| Q |
228 |
catcttttttatttgggttggaggttttggtatattgacaaaaagtgtaggtgggaattgcgttatacttctcctaatgccaaaa |
312 |
Q |
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| T |
44872462 |
catcttttttatttgggttggaggttttggtatattgacaaaaagtgtaggtgggaattgcgttatacttctcctaatgccaaaa |
44872378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 38 - 304
Target Start/End: Original strand, 47527011 - 47527277
Alignment:
| Q |
38 |
aaatagtgtttttgtgcagattggtatacagtttggagtttttgatatggattctcgttcaccacctcctcatatcaacatagaacctgagtattgtcca |
137 |
Q |
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| T |
47527011 |
aaattgtgtttttgtgcagattggtatatgaattgaagtttttgatatggattctcgttcactacctcctgatatcaacatagtacctgagcattgtcca |
47527110 |
T |
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| Q |
138 |
caagctgtgtttgaatggtatcgcttaacaggattaaaagatcgtaaagaaagctttagaagaaaggatttggctttgaaagcaaaacaacatctttttt |
237 |
Q |
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| T |
47527111 |
gaagctgtaagagaatggtaccgcttaacaggactacatgatcctaaagaaagtgctggtagaaaggatttgactttgaaagcaaaacaacatcttcttt |
47527210 |
T |
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| Q |
238 |
atttgggttggaggttttggtatattgacaaaaagtgtaggtgggaattgcgttatacttctcctaa |
304 |
Q |
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| T |
47527211 |
ctttgggttggaagttatggtacattgacaaaaatggtaagcgggaattgcgttatacttctcctaa |
47527277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 51 - 304
Target Start/End: Original strand, 47521775 - 47522028
Alignment:
| Q |
51 |
gtgcagattggtatacagtttggagtttttgatatggattctcgttcaccacctcctcatatcaacatagaacctgagtattgtccacaagctgtgtttg |
150 |
Q |
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| T |
47521775 |
gtgcagatttgtatatgatttggattttttgatatggcttctcgttcagtacctcctgatatcaacataaaacctgagcattgtccagaagctgtaagag |
47521874 |
T |
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| Q |
151 |
aatggtatcgcttaacaggattaaaagatcgtaaagaaagctttagaagaaaggatttggctttgaaagcaaaacaacatcttttttatttgggttggag |
250 |
Q |
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| T |
47521875 |
aatggtaccgcttaacaggactacaagatcgtaaagaaagtgctggtagaaagaatttggctttgaaagcaaaacaacatcttctttctttgggttggaa |
47521974 |
T |
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| Q |
251 |
gttttggtatattgacaaaaagtgtaggtgggaattgcgttatacttctcctaa |
304 |
Q |
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| T |
47521975 |
gttttggtacattgacaaaaattgcaagtgggaattgcgttatacttctcctaa |
47522028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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