View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_high_45 (Length: 317)
Name: NF17408_high_45
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_high_45 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 144 - 302
Target Start/End: Complemental strand, 33715528 - 33715370
Alignment:
| Q |
144 |
ttttggatcttctggagggtatgggggaatggaaggttgcaaggatgcgtttaaaggtcgctattaacctcttcttagcaggatgaagcttctttcctag |
243 |
Q |
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| T |
33715528 |
ttttggatcttctggagggtatgggggaatggaaggttgcaaggatgcgtttaaaggtcgctattaacctcttcttagcaggatgaagcttctttcctag |
33715429 |
T |
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| Q |
244 |
cctcataagtgacatatcaacaaagactttttgttttgaaatgattgaaatggtgaatg |
302 |
Q |
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| T |
33715428 |
cctcataagtgacatatcaacaaagactttttgttttgaaatgattgaaatggtgaatg |
33715370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 15 - 144
Target Start/End: Complemental strand, 33715684 - 33715555
Alignment:
| Q |
15 |
tatctatgtcgccgctatccatcatgccaaccaactctttgcctctgcttgtttcctctaatccattagccttgtctgcggcgtgcacacactcggaaaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33715684 |
tatctatgtcgccgctatccatcatgccaaccaactctttgcctctgcttgtttcctctaatccattagccttgtctgcggcgtgcacacactcggaaaa |
33715585 |
T |
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| Q |
115 |
gaggtcatcgatgcgtatggcggatttatt |
144 |
Q |
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| T |
33715584 |
gaggtcatcgatgcgtatggcggatttatt |
33715555 |
T |
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