View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_high_46 (Length: 312)
Name: NF17408_high_46
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_high_46 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 6 - 296
Target Start/End: Original strand, 3273513 - 3273802
Alignment:
| Q |
6 |
cacagatgctgcagacattactaggaagaaaccnnnnnnntaaccaaatgtcattccagcaacccacattgatggtgaggatggtaaaaatatggtagga |
105 |
Q |
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| T |
3273513 |
cacagatgctgcagacattactaggaagaaaccaaaaaaataaccaaatgtcattccagcaacccacattgatggtgaggatggtaaaaatatggtagga |
3273612 |
T |
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| Q |
106 |
aatagtgctatagaagcaaacacataaatagctaactccgatgtggtgaatgtgtctctctgccaaattattactggaataaacacctgaaaaataaaag |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3273613 |
aatagtgctatagaagcaaacacataaatagctaactccgatgtggtgaatgtgtctctctgccaaattattactggaataaacacctgaaaaataaaag |
3273712 |
T |
|
| Q |
206 |
ctatgttaattatcattgagataggtaattatgcattgtattttatgaaaattgaaagnnnnnnnnttgttacaatgaaatagtaaatatt |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3273713 |
ctatgttaattatcattgagataggtaattatgcattgtattttatgaaaattgaaag-aaaaaaattgttacaatgaaatagtaaatatt |
3273802 |
T |
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