View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17408_high_5 (Length: 750)

Name: NF17408_high_5
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17408_high_5
NF17408_high_5
[»] chr8 (1 HSPs)
chr8 (15-732)||(36334980-36335704)


Alignment Details
Target: chr8 (Bit Score: 570; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 15 - 732
Target Start/End: Complemental strand, 36335704 - 36334980
Alignment:
Q  15 cacagaataggcagaagttcaataaatctgtctctcatgatggaaagtttaaaccttatttgtaacatgatatgatatcctacgatgcttctccttaatg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36335704 cacagaataggcagaagttcaataaatctgtctctcatgatggaaagtttaaaccttatttgtaacatgatatgatatcctacgatgcttctccttaatg 36335605  T
Q  115 taaaataaaaatttcacaagtggttaatcgaagtgttttcttattgcactataaaaatatacttataatatgtattgtgagtgtcaatcattttatacat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36335604 taaaataaaaatttcacaagtggttaatcgaagtgttttcttattgcactataaaaatatacttataatatgtattgtgagtgtcaatcattttatacat 36335505  T
Q  215 cgcattatactaagaaggaaatttactttttaatgtatataagaaaaacagctctggtgtggtgtataatgaagtctctttgaacccgacacttttgatt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    | | | | ||||||||||||||||||||||||||||    
T  36335504 cgcattatactaagaaggaaatttactttttaatgtatataagaaaaacagctctagtgtataatgt-aggcagtctctttgaacccgacacttttgatt 36335406  T
Q  315 agatgtgtgttcaacgtccgacatgtgttggtgtcagacacagacaccaacacatacggatataattacgtttgattaattaattttctcaaatttatca 414  Q
    ||||||||||||||||||| ||||||||||||||      |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36335405 agatgtgtgttcaacgtccaacatgtgttggtgt------cagacaccaacacatacggatataattacgttggattaattaattttctcaaatttatca 36335312  T
Q  415 gtgtcgatgtgttagtgtcattactcattatcatgtccgtgtctgtgttactgctccataatagttttagaaatagtttatcaaatttaagtaatttcaa 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36335311 gtgtcgatgtgttagtgtcattactcattatcatgtccgtgtctgtgttactgctccataatagttttagaaatagtttatcaaatttaagtaatttcaa 36335212  T
Q  515 attatttaacttttttcctcgtcatgtcatctatggcacatctcaacttctagtagtcac--------------tggagtacattacacagtacaaagac 600  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||              ||||||||||||||||||||||||||    
T  36335211 attatttaactgttttcctcgtcatgtcatctatggcacatctcaacttccagtagtcacataaaaacattacttggagtacattacacagtacaaagac 36335112  T
Q  601 tgagaataaaactacagagtacagaatataaatagaatacaacgcagtggcagaaaacagacagtttataagacatacagacaatattagaggtnnnnnn 700  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  36335111 tgagaataaaactacagagtagagaatataaatagaatacaacgcagtggcagaaaacagacagtttataagacatacagacaatattagaggtaaaaag 36335012  T
Q  701 nngttttttatttatttatgttgtacacaaca 732  Q
      ||| |||||||||||||| |||||||||||    
T  36335011 aagttatttatttatttatgctgtacacaaca 36334980  T

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