View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17408_high_51 (Length: 285)
Name: NF17408_high_51
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_high_51 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 3 - 272
Target Start/End: Complemental strand, 6524335 - 6524066
Alignment:
| Q |
3 |
ttcaattaagaatcaaagaaggtaccatatattaatttacaaaccttggtaattgaattgagacaatgttttctcaatagcattgagaagatcaatatca |
102 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6524335 |
ttcaattaagaatcaaataaggtaccatatattaatttacaaaccttggtaattgaattgagacaatgttttgtcaatagcattgagaagatcaatatca |
6524236 |
T |
|
| Q |
103 |
tgatcaatcacaagaactttaacattggctggaaactcattttcaaaggaaaaagtcattgcaaaagnnnnnnntagttgtttgtgaagtgaaagagtga |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
6524235 |
tgatcaatcacaagaactttaacattggctggaaactcatttccaaaggaaaaagtcattgtaaaagaaaagaatagttgtttgtgaagtgaaagagtga |
6524136 |
T |
|
| Q |
203 |
acaagaaaccaaacactatcactcttgagttgatgattcaagtaaggtggttttagggcatatatatagt |
272 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6524135 |
acaagaaaccaaacactattactcttgagttgatgattcaagtaaggtggttttagggcatatatatagt |
6524066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 3 - 272
Target Start/End: Complemental strand, 44545248 - 44544981
Alignment:
| Q |
3 |
ttcaattaagaatcaaagaaggtaccatatattaatttacaaaccttggtaattgaattgagacaatgttttctcaatagcattgagaagatcaatatca |
102 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
44545248 |
ttcaattaagaatcaaacaaggtaccatatattaatttacaaaccttggtaattgaattgagacaattttttctcaatagcattgagaagatggatatca |
44545149 |
T |
|
| Q |
103 |
tgatcaatcacaagaactttaacattggctggaaactcattttcaaaggaaaaagtcattgcaaaagnnnnnnntagttgtttgtgaagtgaaagagtga |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44545148 |
tgatcaatcacaagaactttaacattggctggaaacacattcccaaaggaaaaagtcattgcaaaagaaaagaatagttgtttgtgaagtgaaagagtga |
44545049 |
T |
|
| Q |
203 |
acaagaaaccaaacactatcactcttgagttgatgattcaagtaaggtggttttagggcatatatatagt |
272 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44545048 |
gcaagaaatcaaacactatcactcttgatttgatgattcaagtaaggtggtttta--gcatatatatagt |
44544981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University