View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_high_53 (Length: 281)
Name: NF17408_high_53
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_high_53 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 15 - 281
Target Start/End: Complemental strand, 52186361 - 52186095
Alignment:
| Q |
15 |
aacgtatagcctaatttagttggtggaatttaatttgtaaaacaaaattaggaaaatacttgggtgtannnnnnngtacgcttttcatatgattcttaat |
114 |
Q |
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| T |
52186361 |
aacgtatagcctaatttagttggtggaatttaatttgtaaaacaaaattaggaaaatactcgggtgtatttttttggacgcttttcacatgattcttaat |
52186262 |
T |
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| Q |
115 |
taaattgatatgatttactcaaatcaataattttttcacttctgtatgtgtttgttttcaatggcccttgtcatttagtctaacaataaattccgattga |
214 |
Q |
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| T |
52186261 |
taaattgatatgatttactcaaatcaataattttttcacttctgtatgtgtttgttttcaatggcccttgtcatttagtctaacaataaattccgattga |
52186162 |
T |
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| Q |
215 |
caaatgcttgttcagtgaggtttttctactgatgatccaacacaatgagcacaaaaagattatagat |
281 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
52186161 |
caaatgcttgttcagtgaggtttttctaccgatgatccaacacaatgagcacaaaaagattatagat |
52186095 |
T |
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