View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_high_59 (Length: 252)
Name: NF17408_high_59
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_high_59 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 403612 - 403831
Alignment:
| Q |
14 |
agatgaagccatttatactgaaatcccctataatcaaaactgaatagtaactcttcctgcaggcaaagatcagacagtatgaatcatagacactgaacat |
113 |
Q |
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| T |
403612 |
agatgaagccatttatactgaagtcccctataatcaaaactgaatagtaactcttcctgcaggcaaagatcagacagtatgaatcatagacactgaacat |
403711 |
T |
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| Q |
114 |
gatactaatatgtagacactagtaataatttgaaaaaatgaagattgaaggtgtgttaggtgtctgataactcaatagagtataatgacacgcgtcgttt |
213 |
Q |
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| T |
403712 |
gatactaatatgtagacactagtaataatttgaaaaaatgaagattgaaggtgtgttaggtgtctgataactcaatagagtataatgacacgcgtcgttt |
403811 |
T |
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| Q |
214 |
acgtattagtatgagacact |
233 |
Q |
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|||||||||||||||||||| |
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| T |
403812 |
acgtattagtatgagacact |
403831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 152
Target Start/End: Complemental strand, 8013912 - 8013873
Alignment:
| Q |
113 |
tgatactaatatgtagacactagtaataatttgaaaaaat |
152 |
Q |
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| T |
8013912 |
tgatactaacatgtagacactagtaataatttgaaaaaat |
8013873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 149
Target Start/End: Original strand, 26324098 - 26324149
Alignment:
| Q |
98 |
catagacactgaacatgatactaatatgtagacactagtaataatttgaaaa |
149 |
Q |
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| T |
26324098 |
catagacaccaaacatgacactgacatgtagacactagtaataatttgaaaa |
26324149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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