View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_high_68 (Length: 243)
Name: NF17408_high_68
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_high_68 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 101 - 229
Target Start/End: Complemental strand, 23669054 - 23668926
Alignment:
| Q |
101 |
atagcaagctttcagcacttttatgtgcatatttctcaatcatgtagaaaccaatttgttccttcaccactctctgttcctatattcaaataattgttta |
200 |
Q |
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| T |
23669054 |
atagcaagctttcaacacttttatgtgcatatttctcaatcatgtagaaaccaatttgttccttcaccactctctgttcctatattcaaataattgttta |
23668955 |
T |
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| Q |
201 |
tatgtctcaataaattaatccttagattt |
229 |
Q |
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| T |
23668954 |
tatgtctcaataaattaatcctcagattt |
23668926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 5827018 - 5827105
Alignment:
| Q |
135 |
ctcaatcatgtagaaaccaatttgttccttcaccactctctgttcctatattcaaataattgtttatatgtctcaataaattaatcct |
222 |
Q |
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| T |
5827018 |
ctcaatcatgtagaaaccaatttgttctttcaccattctgtgttgttatattcaaataattgtctatatgtctcaataaattaatcct |
5827105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 23669147 - 23669082
Alignment:
| Q |
7 |
ctttttgtcttattcttccacggctaagcttccaatcctttccctctttcaatctcattcccctgca |
73 |
Q |
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| T |
23669147 |
ctttttgtcttattctcccacgaataagcttccaatcatttccctc-ttcaatctcattcccctgca |
23669082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 98 - 222
Target Start/End: Complemental strand, 9369920 - 9369796
Alignment:
| Q |
98 |
acaatagcaagctttcagcacttttatgtgcatatttctcaatcatgtagaaaccaatttgttccttcaccactctctgttcctatattcaaataattgt |
197 |
Q |
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| T |
9369920 |
acaatagcaagctttcaacacttttatgtgcatatttctcaatcatgtaaaaatcaatttgttccttcaccactctctattcctatatttaaataattgt |
9369821 |
T |
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| Q |
198 |
ttatatgtctcaataaattaatcct |
222 |
Q |
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| T |
9369820 |
ttatatgtctcaataaattaatcct |
9369796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 9370008 - 9369937
Alignment:
| Q |
1 |
tattatctttttgtcttattcttccacggctaagcttccaatcctttccctctttcaatctcattcccctgca |
73 |
Q |
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| T |
9370008 |
tattacctttttgtcttattctcccacggctaagcttccaatcctttccctc-ttcaatctcattcctctgca |
9369937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 98 - 222
Target Start/End: Original strand, 47817657 - 47817781
Alignment:
| Q |
98 |
acaatagcaagctttcagcacttttatgtgcatatttctcaatcatgtagaaaccaatttgttccttcaccactctctgttcctatattcaaataattgt |
197 |
Q |
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||||||||||||||||| |||| ||||||||| |||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
47817657 |
acaatagcaagctttcaacactattatgtgcagatttctcaatcatgtagaaacctatttgttcattcaccactctatgttcctatattcaaataattgt |
47817756 |
T |
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| Q |
198 |
ttatatgtctcaataaattaatcct |
222 |
Q |
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| T |
47817757 |
ttatatgtctcaataaattaatcct |
47817781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 102 - 222
Target Start/End: Complemental strand, 26049402 - 26049282
Alignment:
| Q |
102 |
tagcaagctttcagcacttttatgtgcatatttctcaatcatgtagaaaccaatttgttccttcaccactctctgttcctatattcaaataattgtttat |
201 |
Q |
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||||||||| | | ||||||| ||||| |||||||||||||||||||| |||||||||| ||||||| ||| |||| ||||||||||||| ||| || |
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| T |
26049402 |
tagcaagctataaacacttttcggtgcaaatttctcaatcatgtagaaaacaatttgttctttcaccattctgtgttgttatattcaaataactgtccat |
26049303 |
T |
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| Q |
202 |
atgtctcaataaattaatcct |
222 |
Q |
| |
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||||||||||||||||||||| |
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| T |
26049302 |
atgtctcaataaattaatcct |
26049282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 47817571 - 47817636
Alignment:
| Q |
7 |
ctttttgtcttattcttccacggctaagcttccaatcctttccctctttcaatctcattcccctgca |
73 |
Q |
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| T |
47817571 |
ctttttgtcttattctcccacggctaagcttccaatcctttccctc-ttcaatctcattcccctgca |
47817636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 328585 - 328641
Alignment:
| Q |
135 |
ctcaatcatgtagaaaccaatttgttccttcaccactctctgttcctatattcaaat |
191 |
Q |
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||||||||| ||||| ||||||||||||||||||| ||| ||||| ||||||||||| |
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| T |
328585 |
ctcaatcatatagaatccaatttgttccttcaccattctgtgttcttatattcaaat |
328641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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