View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17408_high_73 (Length: 234)

Name: NF17408_high_73
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17408_high_73
NF17408_high_73
[»] chr3 (3 HSPs)
chr3 (20-214)||(9787434-9787628)
chr3 (20-205)||(3590176-3590361)
chr3 (76-211)||(4576573-4576708)
[»] chr8 (4 HSPs)
chr8 (25-214)||(44506571-44506760)
chr8 (30-203)||(29564595-29564768)
chr8 (75-205)||(24956673-24956803)
chr8 (77-205)||(18176310-18176438)
[»] chr4 (4 HSPs)
chr4 (20-214)||(10012302-10012495)
chr4 (20-214)||(10019443-10019636)
chr4 (30-211)||(14641294-14641475)
chr4 (97-203)||(26110746-26110852)
[»] chr1 (2 HSPs)
chr1 (20-214)||(38318286-38318479)
chr1 (75-205)||(32604776-32604906)
[»] scaffold0005 (1 HSPs)
scaffold0005 (30-211)||(175817-175998)
[»] chr2 (3 HSPs)
chr2 (30-211)||(7230469-7230650)
chr2 (30-211)||(7230795-7230976)
chr2 (75-205)||(21022872-21023002)
[»] scaffold0020 (1 HSPs)
scaffold0020 (97-211)||(131227-131341)


Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 9787434 - 9787628
Alignment:
Q  20 gtttcccatccaaaagtccttcttcctttgcattttttaatattgcaacacatgttggaatagaatattttccattgacatgagatgttgcttcaatttc 119  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9787434 gtttcccatccaaaagtccttcttcctttgcactttttaatattgaaacacatgttggaatagaatattttccattgacatgagatgttgcttcaatttc 9787533  T
Q  120 agccttttcaacttcattatgattttctgctacttggactaatcgttctaatgtttttctcatagctggtgcagtcccaacctttgtcttactct 214  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9787534 agccttttcaagttcattatgattttctgctacttggactaatcgttctaatgtttttctcatagctggtgcagtcccaacctttgtcttactct 9787628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 3590361 - 3590176
Alignment:
Q  20 gtttcccatccaaaagtccttcttcctttgcattttttaatattgcaacacatgttggaatagaatattttccattgacatgagatgttgcttcaatttc 119  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3590361 gtttcccatccaaaagtccttcttcctttgcactttttaatattgcaacacatgttgaaatagaatattttccattgacatgagatgttgcttcaatttc 3590262  T
Q  120 agccttttcaacttcattatgattttctgctacttggactaatcgttctaatgtttttctcatagctggtgcagtcccaacctttg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3590261 agccttttcaacttcattatgattttctgctacttggactaatcgttctaatgtttttctcatagctggtgcagtcccaacctttg 3590176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 76 - 211
Target Start/End: Original strand, 4576573 - 4576708
Alignment:
Q  76 ggaatagaatattttccattgacatgagatgttgcttcaatttcagccttttcaacttcattatgattttctgctacttggactaatcgttctaatgttt 175  Q
    ||||| ||||||| ||||   |||| |||||||||| ||||||| ||||| |||| ||||||||||  ||||||| |||| |||||||| || |||||      
T  4576573 ggaattgaatattgtccaagaacattagatgttgctgcaatttcggccttctcaatttcattatgaccttctgctgcttgaactaatcgctcaaatgtga 4576672  T
Q  176 ttctcatagctggtgcagtcccaacctttgtcttac 211  Q
    ||||||||| || || ||||||| ||||||||||||    
T  4576673 ttctcatagttgttgtagtcccagcctttgtcttac 4576708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 25 - 214
Target Start/End: Complemental strand, 44506760 - 44506571
Alignment:
Q  25 ccatccaaaagtccttcttcctttgcattttttaatattgcaacacatgttggaatagaatattttccattgacatgagatgttgcttcaatttcagcct 124  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44506760 ccatccaaaagtccttcttcctttgcactttttaatattgcaacacatgttggaatagaatattttccattgacatgagatgttgcttcaatttcagcct 44506661  T
Q  125 tttcaacttcattatgattttctgctacttggactaatcgttctaatgtttttctcatagctggtgcagtcccaacctttgtcttactct 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44506660 tttcaacttcattatgattttctgctacttggactaatcgttctaatgtttttctcatagctggtgcagtcccaacctttgccttactct 44506571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 203
Target Start/End: Complemental strand, 29564768 - 29564595
Alignment:
Q  30 caaaagtccttcttcctttgcattttttaatattgcaacacatgttggaatagaatattttccattgacatgagatgttgcttcaatttcagccttttca 129  Q
    |||| ||||||| ||||| | | |||| ||||||| ||||||    ||||| ||||||| ||||   |||| |||||||||| ||||||| ||||| |||    
T  29564768 caaatgtccttcctccttcgtacttttcaatattgtaacacaatcaggaattgaatattgtccaagaacattagatgttgctgcaatttcggccttctca 29564669  T
Q  130 acttcattatgattttctgctacttggactaatcgttctaatgtttttctcatagctggtgcagtcccaacctt 203  Q
    | || ||||||| |||||| | |||| |||||||| || ||||| |||||||| | || |||||||||||||||    
T  29564668 attttattatgactttctgttgcttgaactaatcgctcaaatgtgtttctcattgttgttgcagtcccaacctt 29564595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 205
Target Start/End: Complemental strand, 24956803 - 24956673
Alignment:
Q  75 tggaatagaatattttccattgacatgagatgttgcttcaatttcagccttttcaacttcattatgattttctgctacttggactaatcgttctaatgtt 174  Q
    ||||||||| || | ||||| ||||||||| || ||  |||||| ||||||||||||||||||||||  ||| ||| |||  ||||| || || ||||||    
T  24956803 tggaatagagtactctccatggacatgagaggtggccgcaatttgagccttttcaacttcattatgaccttcagctgcttcaactaaccgctcaaatgtt 24956704  T
Q  175 tttctcatagctggtgcagtcccaacctttg 205  Q
    |||||||||  || || ||||||||||||||    
T  24956703 tttctcataattgttgaagtcccaacctttg 24956673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 205
Target Start/End: Original strand, 18176310 - 18176438
Alignment:
Q  77 gaatagaatattttccattgacatgagatgttgcttcaatttcagccttttcaacttcattatgattttctgctacttggactaatcgttctaatgtttt 176  Q
    ||||||| || | ||||| ||||||||| || ||| |||||| ||||||||||||||||||||||  ||| ||| |||  ||||| || || |||||| |    
T  18176310 gaatagagtactctccatggacatgagaggtggctgcaatttgagccttttcaacttcattatgaccttcggctgcttcaactaaccgctcaaatgttct 18176409  T
Q  177 tctcatagctggtgcagtcccaacctttg 205  Q
    |||||||| || ||  |||||||||||||    
T  18176410 tctcatagttgttgttgtcccaacctttg 18176438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 10012302 - 10012495
Alignment:
Q  20 gtttcccatccaaaagtccttcttcctttgcattttttaatattgcaacacatgttggaatagaatattttccattgacatgagatgttgcttcaatttc 119  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10012302 gtttcccatccaaaagtccttcttcctttgcactttttaatattgcaa-acatgttggaatagaatattttccattgacatgagatgttgcttcaatttc 10012400  T
Q  120 agccttttcaacttcattatgattttctgctacttggactaatcgttctaatgtttttctcatagctggtgcagtcccaacctttgtcttactct 214  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  10012401 agccttttcaacttcattatgattttctgctacttggattaatcgttctaatgtttttctcatagttggtgcagtcccaacctttgccttactct 10012495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 10019443 - 10019636
Alignment:
Q  20 gtttcccatccaaaagtccttcttcctttgcattttttaatattgcaacacatgttggaatagaatattttccattgacatgagatgttgcttcaatttc 119  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10019443 gtttcccatccaaaagtccttcttcctttgcactttttaatattgcaa-acatgttggaatagaatattttccattgacatgagatgttgcttcaatttc 10019541  T
Q  120 agccttttcaacttcattatgattttctgctacttggactaatcgttctaatgtttttctcatagctggtgcagtcccaacctttgtcttactct 214  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  10019542 agccttttcaacttcattatgattttctgctacttggattaatcgttctaatgtttttctcatagttggtgcagtcccaacctttgccttactct 10019636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 211
Target Start/End: Complemental strand, 14641475 - 14641294
Alignment:
Q  30 caaaagtccttcttcctttgcattttttaatattgcaacacatgttggaatagaatattttccattgacatgagatgttgcttcaatttcagccttttca 129  Q
    |||| ||||||| ||||| ||| |||| ||||||| ||||||    ||||| ||||||| ||||   |||| |||||||||| ||||||| ||||| |||    
T  14641475 caaatgtccttcctccttcgcacttttcaatattgtaacacaatcaggaattgaatattgtccaagaacattagatgttgctgcaatttcggccttctca 14641376  T
Q  130 acttcattatgattttctgctacttggactaatcgttctaatgtttttctcatagctggtgcagtcccaacctttgtcttac 211  Q
    | || |||||||  ||||||| |||| |||||||| || ||||| |||||||||| || ||||||||||||||| |||||||    
T  14641375 attttattatgaccttctgctgcttgaactaatcgctcaaatgtgtttctcatagttgttgcagtcccaaccttggtcttac 14641294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 97 - 203
Target Start/End: Complemental strand, 26110852 - 26110746
Alignment:
Q  97 acatgagatgttgcttcaatttcagccttttcaacttcattatgattttctgctacttggactaatcgttctaatgtttttctcatagctggtgcagtcc 196  Q
    |||| |||||||||| ||||||| ||||| |||| ||||||||||  ||||||| |||| |||||||| || ||||| |||||||| | || ||||||||    
T  26110852 acattagatgttgctacaatttcggccttctcaatttcattatgaccttctgctgcttgaactaatcgctcaaatgtgtttctcatcgttgttgcagtcc 26110753  T
Q  197 caacctt 203  Q
    |||||||    
T  26110752 caacctt 26110746  T

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Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 38318286 - 38318479
Alignment:
Q  20 gtttcccatccaaaagtccttcttcctttgcattttttaatattgcaacacatgttggaatagaatattttccattgacatgagatgttgcttcaatttc 119  Q
    ||||| |||||||| |||| |||||||||||| ||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||| | ||||    
T  38318286 gtttctcatccaaaggtccgtcttcctttgcactttttaatattgcaacacatgttggaatataaaattgtccattgacatgagatgttgctttactttc 38318385  T
Q  120 agccttttcaacttcattatgattttctgctacttggactaatcgttctaatgtttttctcatagctggtgcagtcccaacctttgtcttactct 214  Q
    |||||||||||||| ||||||||||||| || ||||||||| ||||||||||||||||||||||| ||||| | || ||||||||| ||||||||    
T  38318386 agccttttcaacttgattatgattttcttcttcttggactattcgttctaatgtttttctcatagttggtgta-tcacaacctttgccttactct 38318479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 205
Target Start/End: Complemental strand, 32604906 - 32604776
Alignment:
Q  75 tggaatagaatattttccattgacatgagatgttgcttcaatttcagccttttcaacttcattatgattttctgctacttggactaatcgttctaatgtt 174  Q
    ||||||||| || | ||||| ||||||||| || ||  |||||| ||||||||||||||||||||||  |||  || |||  ||||| || || ||||||    
T  32604906 tggaatagagtactctccatggacatgagaggtggccgcaatttgagccttttcaacttcattatgaccttcatctgctttaactaaccgctcaaatgtt 32604807  T
Q  175 tttctcatagctggtgcagtcccaacctttg 205  Q
    |||||||||| || ||  |||||||||||||    
T  32604806 tttctcatagttgttgttgtcccaacctttg 32604776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 211
Target Start/End: Original strand, 175817 - 175998
Alignment:
Q  30 caaaagtccttcttcctttgcattttttaatattgcaacacatgttggaatagaatattttccattgacatgagatgttgcttcaatttcagccttttca 129  Q
    |||| ||||||| ||||| ||| |||| ||||||| ||||||    ||||| ||||||| ||||   |||| |||||||||| ||||||| ||||| |||    
T  175817 caaatgtccttcctccttcgcacttttcaatattgtaacacaatcaggaattgaatattgtccaagaacattagatgttgctgcaatttcggccttctca 175916  T
Q  130 acttcattatgattttctgctacttggactaatcgttctaatgtttttctcatagctggtgcagtcccaacctttgtcttac 211  Q
    | || |||||||  ||||||| |||| |||||||| || ||||| |||||||||| || ||||||||||||||| |||||||    
T  175917 attttattatgaccttctgctgcttgaactaatcgctcaaatgtgtttctcatagttgttgcagtcccaaccttggtcttac 175998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 211
Target Start/End: Complemental strand, 7230650 - 7230469
Alignment:
Q  30 caaaagtccttcttcctttgcattttttaatattgcaacacatgttggaatagaatattttccattgacatgagatgttgcttcaatttcagccttttca 129  Q
    |||| ||||||| ||||| ||| |||| ||||||| ||||||    ||||| ||||||| ||||   |||| |||||||||| ||||||| ||||| |||    
T  7230650 caaatgtccttcctccttcgcacttttcaatattgtaacacaatcaggaattgaatattgtccaagaacattagatgttgctgcaatttcggccttctca 7230551  T
Q  130 acttcattatgattttctgctacttggactaatcgttctaatgtttttctcatagctggtgcagtcccaacctttgtcttac 211  Q
    | ||||||||||  ||||| | |||| |||||||| || ||||| |||||||||| || ||||||||||||||| |||||||    
T  7230550 atttcattatgacattctgatgcttgaactaatcgctcaaatgtgtttctcatagttgttgcagtcccaaccttggtcttac 7230469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 211
Target Start/End: Complemental strand, 7230976 - 7230795
Alignment:
Q  30 caaaagtccttcttcctttgcattttttaatattgcaacacatgttggaatagaatattttccattgacatgagatgttgcttcaatttcagccttttca 129  Q
    |||| ||||||| ||||| ||| |||| ||||||| ||||||    ||||| ||||||| ||||   |||| |||||||||| ||||||| ||||| |||    
T  7230976 caaatgtccttcctccttcgcacttttcaatattgtaacacaatcaggaattgaatattgtccaagaacattagatgttgctgcaatttcggccttctca 7230877  T
Q  130 acttcattatgattttctgctacttggactaatcgttctaatgtttttctcatagctggtgcagtcccaacctttgtcttac 211  Q
    | ||||||||||  ||||| | |||| |||||||| || ||||| |||||||||| || ||||||||||||||| |||||||    
T  7230876 atttcattatgacattctgatgcttgaactaatcgctcaaatgtgtttctcatagttgttgcagtcccaaccttggtcttac 7230795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 205
Target Start/End: Original strand, 21022872 - 21023002
Alignment:
Q  75 tggaatagaatattttccattgacatgagatgttgcttcaatttcagccttttcaacttcattatgattttctgctacttggactaatcgttctaatgtt 174  Q
    ||||||||| || | ||||| ||||||||| || ||  |||||| ||||||||||||||||||||||  |||  || |||  ||||| || || ||||||    
T  21022872 tggaatagagtactctccatggacatgagaggtggccgcaatttgagccttttcaacttcattatgaccttcaactgcttaaactaaccgctcaaatgtt 21022971  T
Q  175 tttctcatagctggtgcagtcccaacctttg 205  Q
    |||||||||| || ||  |||||||||||||    
T  21022972 tttctcatagttgttgttgtcccaacctttg 21023002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 211
Target Start/End: Complemental strand, 131341 - 131227
Alignment:
Q  97 acatgagatgttgcttcaatttcagccttttcaacttcattatgattttctgctacttggactaatcgttctaatgtttttctcatagctggtgcagtcc 196  Q
    |||| |||||||||| ||||||||  ||| | || ||||||||||  || |||| |||| |||||||| || ||||| |||||||||| || ||||||||    
T  131341 acattagatgttgctgcaatttcattcttcttaatttcattatgaccttttgctgcttgaactaatcgctcaaatgtgtttctcatagttgttgcagtcc 131242  T
Q  197 caacctttgtcttac 211  Q
    ||||||| |||||||    
T  131241 caaccttggtcttac 131227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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