View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17408_high_78 (Length: 226)
Name: NF17408_high_78
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_high_78 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 54 - 210
Target Start/End: Original strand, 42414643 - 42414799
Alignment:
| Q |
54 |
aaaaaatgataagagaatatttttatctttatcatttggtcttgatgattcattttttcttgaaatataaaaccacacgatt---tttcttcaagcagat |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42414643 |
aaaaaatgataagagaatatttttatctttatcatttggtcttgatgattcattttttcttgaaatataaaaccacacgatttaatttcttcaagcagat |
42414742 |
T |
|
| Q |
151 |
gnnnnnnngcaacataagtcatagaatgcaataaccatgcacatcatctaaagacaacct |
210 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42414743 |
gtttttttgcaacataagtcatagaatgcaataaccatgca---catctaaagacaacct |
42414799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 42414473 - 42414525
Alignment:
| Q |
18 |
tgcaaatatacattttattctcactttgtatccaataaaaaatgataagagaa |
70 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42414473 |
tgcaaatatacattttattctcactttgtatccaataaaaaatgataagagaa |
42414525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University