View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_high_8 (Length: 647)
Name: NF17408_high_8
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 576; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 17 - 628
Target Start/End: Complemental strand, 31097897 - 31097286
Alignment:
| Q |
17 |
aatatggcccattatttggatcgcagagaaaaaagtaggtgattggtgtttccaagcacagtaattgctacaagatagtttaaaggtaatggaagcattg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31097897 |
aatatggcccattatttggatcgcagagaaaaaagtaggtgattggtgtttccaagcacagtaattgctacaagatagtttaaaggtaatggaagcattg |
31097798 |
T |
|
| Q |
117 |
agaatgcgagacggattggttggggtagaggtagtggtggctatagcagcgataatgagaatgttacgttgttaagctttctccagttgatgcctttaca |
216 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31097797 |
agaatgcgagacggattggtcggggtagaggtagtggtggctatagcagcgataatgagaatgttacgttgttaagctttctccagttgatgcctttaca |
31097698 |
T |
|
| Q |
217 |
aagtaaatccacatcatggagacagcaaggcaagtggatcaaggcttgatttgagaactgagaatgtgaggtggctggtctaatagtaatgatattttta |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31097697 |
aagtaaatccacatcatggagacagcaaggcaagtggatcaaggcttgatttgagaactgagaatgtgaggtggctggtttaatagtaatgatattttta |
31097598 |
T |
|
| Q |
317 |
tcaagtcagtttttatatcaagatttaattaacaatcagtttgatatttttaaattgataaagnnnnnnnnacttattctcaatctttatccctttagag |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31097597 |
tcaagtcagtttttatatcaagatttaattaacaatcagtttgatatttttaaattgataaagttttttttacttattctcaatctttatccctttagag |
31097498 |
T |
|
| Q |
417 |
ttctatatactgatcaaaggtagcaagaattcaaccgatcaacaattacctacacaagactaatcatgatcagttgattgtgtggaactaatgaggtcca |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31097497 |
ttctatatactgatcaaaggtagcaagaattcaaccgatcaacaattacctacacaagactaatcatgatcagttgattgtgtggaactaatgaggtcca |
31097398 |
T |
|
| Q |
517 |
cctcattcctcgagctccgtcactctgtacctgttacatcgatgaatgcttgtatggttttggtgtcgttaacaacgacttcaaagttgttaagctcggt |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31097397 |
cctcattcctcgagctccgtcactctgtacctgttacatcgatgaatgcttgtatggttttggtgttgttaacaacgacttcaaagttgttaagctcggt |
31097298 |
T |
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| Q |
617 |
ttatctgatacc |
628 |
Q |
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|||||||||||| |
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| T |
31097297 |
ttatctgatacc |
31097286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 502 - 606
Target Start/End: Complemental strand, 31103980 - 31103876
Alignment:
| Q |
502 |
aactaatgaggtccacctcattcctcgagctccgtcactctgtacctgttacatcgatgaatgcttgtatggttttggtgtcgttaacaacgacttcaaa |
601 |
Q |
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|||||| |||||||| || |||||||| ||||| |||||| ||| | |||| ||||||| ||||||||||||||||| |||||| ||||||||||| |
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| T |
31103980 |
aactaaagaggtccatcttattcctcgcgctccctcactcggtaaccattactctgatgaatccttgtatggttttggtgctgttaacgacgacttcaaa |
31103881 |
T |
|
| Q |
602 |
gttgt |
606 |
Q |
| |
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||||| |
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| T |
31103880 |
gttgt |
31103876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 502 - 606
Target Start/End: Original strand, 31107020 - 31107124
Alignment:
| Q |
502 |
aactaatgaggtccacctcattcctcgagctccgtcactctgtacctgttacatcgatgaatgcttgtatggttttggtgtcgttaacaacgacttcaaa |
601 |
Q |
| |
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|||||||||||||||| | ||||| || ||||| |||||| ||| | |||||| ||||||| ||||||| ||||||||| ||||| |||||||||| |
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| T |
31107020 |
aactaatgaggtccactttattccccgtgctccttcactcggtagccattacattgatgaatccttgtatagttttggtgctgttaatggcgacttcaaa |
31107119 |
T |
|
| Q |
602 |
gttgt |
606 |
Q |
| |
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||||| |
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| T |
31107120 |
gttgt |
31107124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 516 - 622
Target Start/End: Complemental strand, 38956483 - 38956377
Alignment:
| Q |
516 |
acctcattcctcgagctccgtcactctgtacctgttacatcgatgaatgcttgtatggttttggtgtcgttaacaacgacttcaaagttgttaagctcgg |
615 |
Q |
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||||||||||| | |||||||||||| ||| |||||||| ||||||| |||||| ||||||| |||||||| || |||||||||||||||| ||| | |
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| T |
38956483 |
acctcattcctggtgctccgtcactcggtaattgttacattgatgaatcattgtattgttttggagtcgttaataatgacttcaaagttgttaggcttag |
38956384 |
T |
|
| Q |
616 |
tttatct |
622 |
Q |
| |
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||||||| |
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| T |
38956383 |
tttatct |
38956377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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