View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17408_high_80 (Length: 222)
Name: NF17408_high_80
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_high_80 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 14746072 - 14746202
Alignment:
| Q |
1 |
agaaactaacaaatagagaacaaagtacaagaaagaagaacaccttaagttttggagttcttgaatatttagatttagagaaagaaaagcacctctctga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
14746072 |
agaaactaacaaatagagaacaaagtacaagaaagaagaacaccttaagttttggaattcttgaatatttagatttagagaaacaaaagcacctctctaa |
14746171 |
T |
|
| Q |
101 |
aaggttatgtggctccagctgaatatatatt |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
14746172 |
aaggttatgtggctccagctgaatatatatt |
14746202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 11 - 147
Target Start/End: Original strand, 14743051 - 14743179
Alignment:
| Q |
11 |
aaatagagaacaaagtacaagaaagaagaa-caccttaagttttggagttcttgaatatttagatttagagaaagaaaagcacctctctgaaaggttatg |
109 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
14743051 |
aaatagagaacaaagtacaagaaataagaaacaccttaagttttggagattttgaatatttagatttagagaaacaaaagcacctctc---------atg |
14743141 |
T |
|
| Q |
110 |
tggctccagctgaatatatatttattaagtaacatcat |
147 |
Q |
| |
|
| ||||| |||||||| ||||||||||| ||||||||| |
|
|
| T |
14743142 |
tcgctcctgctgaataaatatttattaattaacatcat |
14743179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University