View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17408_high_9 (Length: 641)

Name: NF17408_high_9
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17408_high_9
NF17408_high_9
[»] chr3 (1 HSPs)
chr3 (12-626)||(39267783-39268408)


Alignment Details
Target: chr3 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 12 - 626
Target Start/End: Original strand, 39267783 - 39268408
Alignment:
Q  12 agagaagaaagtcaaacatgacctaatcgcttttaatctatttttacttcgttagtataaaccaaccattgccaagtgcaccacaatttatacaacctaa 111  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39267783 agagaaggaagtcgaacatgacctaatcgcttttaatctatttttacttcgttagtataaaccaaccattgccaagtgcaccacaatttatacaacctaa 39267882  T
Q  112 ttttagtcgtagtagttgagtaagaataccacaatcccagttgatactaaatttta---------ctactcgccaaaaaatttagtaaatttgctaaata 202  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||         ||||| |||||| ||||||||||||||||||||||    
T  39267883 ttttagtcgtagtagttgagtaagaattccacaatcccagttgatactaaattttataaattttactacttgccaaataatttagtaaatttgctaaata 39267982  T
Q  203 gactatcaataaaatggattttgtgaattttctagtcagctatctatctctacttagatgatttgctgagacacttggaaacctacgcatcgaacacaca 302  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39267983 gactatcaataaattggattttgtgaattttctagtcagctatctatctctactt-gatgatttgctgagacacttggaaacctacgcatcgaacacaca 39268081  T
Q  303 gtaagt----agacacattgtttcttttactatgttatcatcaaaccatcagacgatgttcctttgctctattatcatcaaaacattaagtgaagtattg 398  Q
    || |||    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39268082 gttagttagtagacaaattgtttcttttactatgttatcatcaaaccatcagacgatgttcctttgctctattatcatcgaaacattaagtgaagtattg 39268181  T
Q  399 tgatcaaacagaaccgatccttacaaaaacaatcggtagtagctagatcaagttccagccgaagcagagtctagaagtattacactaaaatttaatttaa 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39268182 tgatcaaacagaaccgatccttacaaaaacaatcggtagtagctagatcaagttccagccgaagcagagtctcgaagtattacactaaaatttaatttaa 39268281  T
Q  499 tttaaacttacatttacaatatcccttcttcagggnnnnnnntctaaaccaattgtcataatcaaaaatcaaaatcttcgtttccttatttatggggtac 598  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39268282 tttaaacttacatttacaatatcccttcttcaggg-aaaaaatctaaaccaattgtcataatcaaaaatcaaaatcttcgtttccttatttatggggtac 39268380  T
Q  599 aagtcaagtcatgtctaatgtctattgt 626  Q
    ||||||||||||||||||||||||||||    
T  39268381 aagtcaagtcatgtctaatgtctattgt 39268408  T

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