View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17408_low_1 (Length: 1412)
Name: NF17408_low_1
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_1 |
 | |
|
| [»] scaffold0205 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 634; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 74 - 751
Target Start/End: Original strand, 35989951 - 35990628
Alignment:
| Q |
74 |
caatgtgcatgtaatattaattctgttttgctaggatttacagttcttgagtctttgttactgtgtttgatccatgtgttgaaatggtttttggttgttt |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
35989951 |
caatgtgcatgtaatattaattctgttttgctgggatttacagttcttgagtctttgttactgtgtttgatccatgtgttgaaatgggttttggttgttt |
35990050 |
T |
|
| Q |
174 |
ttgatttatctgattcagtttgttttatctgcagattgtttacacatttgggttattgagcttttgaaatggggaaatcttcaatccctgtagtgggggt |
273 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35990051 |
ttgatttatctgattcagtatgctttatctgcagattgtttacacatttgggttattgagcttttgaaatggggaaatcttcaatcactgtagtgggggt |
35990150 |
T |
|
| Q |
274 |
tctgctgctgtgttttctggtttcattttcagaagcagaatatagaaagtataaagatcctaaagtgccattgaatagaagaatcaaagatttaatgact |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
35990151 |
tctgctgctgtgttttctggtttcattttcagaagcagaatatagaaagtataaagatcctaaagtgccattgaatagaagaatcaaagatttaatgagt |
35990250 |
T |
|
| Q |
374 |
agaatgactttggaggaaaagattggtcaaatgactcagcttgaaaggagtgttgctactcctgaagctatgaccaagtacttcattggtaaaatcattc |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35990251 |
agaatgactttggaggaaaagattggtcaaatgactcagcttgaaaggagtgttgctactcctgaagctatgaccaagtacttcattggtaaaatcattc |
35990350 |
T |
|
| Q |
474 |
atcactttgctaatcaaatctagtagttttttgtactgtttgatgttgtcatgtttttctgatttctgaatctgagcatgtgatgatagatttgtgtaaa |
573 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35990351 |
atcactttgctaatcaaatctagtagttttttgtactgtttgatgttgtcatgtttctctgatttctgaatctgagcatgtgatgatagatttgtgtaaa |
35990450 |
T |
|
| Q |
574 |
gtgtactatgtagcactaacacttcagatcaaatgtgtgtggtagactggtagtgtcggtgtccaacacttactcgacactgacacatgtggtgacattc |
673 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35990451 |
gtgtactatgtagcactaacacttcagatcaaatgtgtgtggtagactggtagtgtcggtgtccaacacttactcgacactgacacatgtggttacattc |
35990550 |
T |
|
| Q |
674 |
agttattttattttctcaagttattatcagtgttgacggggtagtgtggtgtctggtgtcagtgtttcgtagaaatgg |
751 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35990551 |
agttattttattttctcaaattattatcagtgtcgacggggtagtgtggtgtctggtgttagtgtttcgtagaaatgg |
35990628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 778 - 1401
Target Start/End: Original strand, 35990654 - 35991277
Alignment:
| Q |
778 |
gtttgctgtaatgagttgattttatggatgtgtaacttatcattgatgagcagggagtgtgctaagtgggggagggagtgttccagctgagaaggcatct |
877 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35990654 |
gtttgctgtaatgagttgattttatggatgtgtaacttatcattgatgagcagggagtgtgctaagtgggggagggagtgttccagctgagaaggcatct |
35990753 |
T |
|
| Q |
878 |
gctgcgacttgggtgaaaatggtgaatcagatccaaaatgcagctttatctactcctcttgggattccaatgatttatgggatagatgctgttcatggtc |
977 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35990754 |
gctgagacttgggtgaaaatggtgaatcagatccaaaatgcagctttatctactcctcttgggattccaatgatttatgggatagatgctgttcatggtc |
35990853 |
T |
|
| Q |
978 |
acaataatgtctacaacgctactatttttcctcacaatgttggtcttggagttaccaggcaagtttatgtatatgcaggaattttaatagccatgaaatg |
1077 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35990854 |
acaataatgtctacaatgctactatttttcctcacaatgttggtcttggagttaccaggcaagtttatgtatatgcaggaattttaatagccatgaaatg |
35990953 |
T |
|
| Q |
1078 |
attgaaaagaagaaagaattagtagtgacattaaattcatatttgataatttgtaactggaagctatacttgaagaagtgaacctttgcgataaaaacaa |
1177 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35990954 |
attgaaaagaagaaagaattagcagtgacattaaattcatatttgataatttgtaactggaagctatacttgaagaagtgaacctttgcgataaaaacaa |
35991053 |
T |
|
| Q |
1178 |
accttgcaatttagtgcattttcttgcttttattgtaatggaatctactgtttattagggatccagtgctaataaaaaagattggagaagcaactgccct |
1277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35991054 |
accttgcaatttagtgcattttcttgcttttattgtaatggaatctactgtttattagggatccagtgctaataaaaaagattggagaagcaactgccct |
35991153 |
T |
|
| Q |
1278 |
tgaagttagagctactggaattccatacgtgtttgctccatgtatcgcggtaaagaaacagtgtttcaatattctgttatttaaatcatatgtaacattg |
1377 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35991154 |
tgaagttagagctactggaattccatatgtgtttgctccatgtatcgcggtaaagaaacagtgtttcaatattctgttatttaaatcatatgtaacattg |
35991253 |
T |
|
| Q |
1378 |
atcaagtttgctgatatgatgatg |
1401 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
35991254 |
atcaagtttgctgatatgttgatg |
35991277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 2e-21; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 935 - 1028
Target Start/End: Original strand, 9989709 - 9989802
Alignment:
| Q |
935 |
cttgggattccaatgatttatgggatagatgctgttcatggtcacaataatgtctacaacgctactatttttcctcacaatgttggtcttggag |
1028 |
Q |
| |
|
||||| ||||||||||||||||| || |||||||||||||| | |||||||| || || ||||||||||||||||||||||||||||| |||| |
|
|
| T |
9989709 |
cttggaattccaatgatttatggaattgatgctgttcatggaaataataatgtatataaagctactatttttcctcacaatgttggtctaggag |
9989802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 935 - 1021
Target Start/End: Original strand, 9996109 - 9996195
Alignment:
| Q |
935 |
cttgggattccaatgatttatgggatagatgctgttcatggtcacaataatgtctacaacgctactatttttcctcacaatgttggt |
1021 |
Q |
| |
|
||||| ||||||||||| ||||| || |||||||||||||| | ||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
9996109 |
cttggaattccaatgatatatggaattgatgctgttcatggaaataataatgtctataacgcaactatttttcctcacaatgttggt |
9996195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 935 - 1021
Target Start/End: Original strand, 10002034 - 10002120
Alignment:
| Q |
935 |
cttgggattccaatgatttatgggatagatgctgttcatggtcacaataatgtctacaacgctactatttttcctcacaatgttggt |
1021 |
Q |
| |
|
||||| ||||||||||| ||||| || |||||||||||||| | ||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
10002034 |
cttggaattccaatgatatatggaattgatgctgttcatggaaataataatgtctataacgcaactatttttcctcacaatgttggt |
10002120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 935 - 1028
Target Start/End: Original strand, 10011588 - 10011681
Alignment:
| Q |
935 |
cttgggattccaatgatttatgggatagatgctgttcatggtcacaataatgtctacaacgctactatttttcctcacaatgttggtcttggag |
1028 |
Q |
| |
|
||||| ||||||||||||||||| || |||||||||||||| || || ||||| || || ||||||||||| ||||||||||||||||| |||| |
|
|
| T |
10011588 |
cttggaattccaatgatttatggaattgatgctgttcatggacataacaatgtttataaagctactattttccctcacaatgttggtctaggag |
10011681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1255 - 1304
Target Start/End: Original strand, 9990262 - 9990311
Alignment:
| Q |
1255 |
aagattggagaagcaactgcccttgaagttagagctactggaattccata |
1304 |
Q |
| |
|
|||||||| || |||||||| ||||||| |||||| |||||||||||||| |
|
|
| T |
9990262 |
aagattggtgatgcaactgctcttgaagctagagcaactggaattccata |
9990311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 1e-16; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 222 - 271
Target Start/End: Complemental strand, 4800215 - 4800166
Alignment:
| Q |
222 |
tgggttattgagcttttgaaatggggaaatcttcaatccctgtagtgggg |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4800215 |
tgggttattgagcttttgaaatggggaaatctgcaatccctgtagtgggg |
4800166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 4804036 - 4803991
Alignment:
| Q |
226 |
ttattgagcttttgaaatggggaaatcttcaatccctgtagtgggg |
271 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4804036 |
ttattgagcttttgaaatggggaaatctgcaatccctgtagtgggg |
4803991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 935 - 1043
Target Start/End: Complemental strand, 33356936 - 33356828
Alignment:
| Q |
935 |
cttgggattccaatgatttatgggatagatgctgttcatggtcacaataatgtctacaacgctactatttttcctcacaatgttggtcttggagttacca |
1034 |
Q |
| |
|
||||| |||||||| |||||||||| |||||||||||||| ||| ||| ||||| || |||||||||||||||||| |||| || |||| ||||| |
|
|
| T |
33356936 |
cttggaattccaattttttatgggattgatgctgttcatggcaacagccctgtttacaaagcaactatttttcctcacaatattgggctgggagctacca |
33356837 |
T |
|
| Q |
1035 |
ggcaagttt |
1043 |
Q |
| |
|
|| |||||| |
|
|
| T |
33356836 |
ggtaagttt |
33356828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 648 - 706
Target Start/End: Original strand, 46179910 - 46179968
Alignment:
| Q |
648 |
cgacactgacacatgtggtgacattcagttattttattttctcaagttattatcagtgt |
706 |
Q |
| |
|
|||||| |||||||||| | | ||||| ||| ||||||||||||| ||||||||||||| |
|
|
| T |
46179910 |
cgacaccgacacatgtgattatattcaattaatttattttctcaacttattatcagtgt |
46179968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 222 - 271
Target Start/End: Original strand, 22332422 - 22332471
Alignment:
| Q |
222 |
tgggttattgagcttttgaaatggggaaatcttcaatccctgtagtgggg |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22332422 |
tgggttattgagcttttgaaatggggaaatctgcaatccctgtagtgggg |
22332471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 6e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 6e-16
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 23833759 - 23833711
Alignment:
| Q |
222 |
tgggttattgagcttttgaaatggggaaatcttcaatccctgtagtggg |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23833759 |
tgggttattgagcttttgaaatggggaaatctgcaatccctgtagtggg |
23833711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 628 - 706
Target Start/End: Complemental strand, 43328546 - 43328468
Alignment:
| Q |
628 |
gtcggtgtccaacacttactcgacactgacacatgtggtgacattcagttattttattttctcaagttattatcagtgt |
706 |
Q |
| |
|
|||||||||| |||| || ||||| ||||||||||||| ||||| | |||||| |||||||||| ||||||| ||||| |
|
|
| T |
43328546 |
gtcggtgtccgacaccaacacgacaatgacacatgtggttacattaaattatttcattttctcaaattattataagtgt |
43328468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 941 - 1042
Target Start/End: Complemental strand, 11247194 - 11247093
Alignment:
| Q |
941 |
attccaatgatttatgggatagatgctgttcatggtcacaataatgtctacaacgctactatttttcctcacaatgttggtcttggagttaccaggcaag |
1040 |
Q |
| |
|
||||| ||||| ||||| || ||||| |||||||| |||||||||||||| || ||||| || ||||| || |||||||| |||||| ||||||||||| |
|
|
| T |
11247194 |
attcccatgatgtatggtattgatgccgttcatggacacaataatgtctataatgctaccatatttccccataatgttgggcttggatgtaccaggcaag |
11247095 |
T |
|
| Q |
1041 |
tt |
1042 |
Q |
| |
|
|| |
|
|
| T |
11247094 |
tt |
11247093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 377 - 429
Target Start/End: Complemental strand, 11248085 - 11248033
Alignment:
| Q |
377 |
atgactttggaggaaaagattggtcaaatgactcagcttgaaaggagtgttgc |
429 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||| |||| ||||||||||| |
|
|
| T |
11248085 |
atgactttggaggagaagattggtcagatgactcagattgataggagtgttgc |
11248033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 648 - 708
Target Start/End: Complemental strand, 31614195 - 31614135
Alignment:
| Q |
648 |
cgacactgacacatgtggtgacattcagttattttattttctcaagttattatcagtgttg |
708 |
Q |
| |
|
|||||||||||||| |||| ||| | |||||||| |||||||||| |||||||||||||| |
|
|
| T |
31614195 |
cgacactgacacatatggttacaattagttatttcattttctcaaactattatcagtgttg |
31614135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0205 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0205
Description:
Target: scaffold0205; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 650 - 692
Target Start/End: Complemental strand, 21473 - 21431
Alignment:
| Q |
650 |
acactgacacatgtggtgacattcagttattttattttctcaa |
692 |
Q |
| |
|
||||||| ||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
21473 |
acactgatacatgtggttacattcaattattttattttctcaa |
21431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 670 - 712
Target Start/End: Complemental strand, 2512799 - 2512757
Alignment:
| Q |
670 |
attcagttattttattttctcaagttattatcagtgttgacgg |
712 |
Q |
| |
|
||||| ||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
2512799 |
attcaattattttattttctcaaattattaccagtgttgacgg |
2512757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University