View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_low_10 (Length: 630)
Name: NF17408_low_10
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 596; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 18 - 621
Target Start/End: Original strand, 26454726 - 26455329
Alignment:
| Q |
18 |
catcaattatcattatgtcaatactttcatcatcaacgttcaccatgttgcatttctcattcttgggattatcacatccacaaaaccttcatgaggagtg |
117 |
Q |
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| T |
26454726 |
catcaattatcattatgtcaatactttcatcatcaacgttcaccatgttgcatttctcattcttgggattatcacatccacaaaaccttcatgaggagtg |
26454825 |
T |
|
| Q |
118 |
gccgggattttggttgacaaatggccaatttgtatctcattcttgatacaagcttctttgttcgtttgagttgtttcttggctcaccttcagctccttaa |
217 |
Q |
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| T |
26454826 |
gccgggattttggttgacaaatggccaatttgtatctcattcttgatacaagcttctttgttcttttgagttgtttcttggctcaccttcagctccttaa |
26454925 |
T |
|
| Q |
218 |
gattgttttgtgtggatttcatgaacttgcccataatctcatctaacttaaagggtttcctttaatgctagttgggtggaggtacttgtgtttgatttag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26454926 |
gattgttttgtgtggatttcatgaacttgcccataatctcatctaacttaaagggtttcctttaatgctagttgggtggaggtacttgtgtttgatttag |
26455025 |
T |
|
| Q |
318 |
aaagttgttgcaccacttcatattatgatgattttttcttgcattaatgtaggtgttaaaaaatgggttgcctctcttgtaatcaccacgtagttggctt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26455026 |
aaagttgttgcaccacttcatattatgatgattttttcttgcattaatgtaggtgttaaaaaatgggttgcctctcttgtaatcaccacgtagttggctt |
26455125 |
T |
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| Q |
418 |
cctcagttgtatcttcaacaatgccttccttgttctatttcccataattacacttccatacttttgtttgttgtgacttggaacaatggcttcctcagtt |
517 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26455126 |
cctcagttgtatcttcaacaatgccttacttgttctatttcccataattacacttccatacttttgtttgttgtgacttggaacaatggcttcctcagtt |
26455225 |
T |
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| Q |
518 |
gcatcttcagtttaacttcttggtgagagtcacgaattgggaagccatagggttgtggttgaccataaaagttctataggcatccagctccaaaacttcc |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26455226 |
gcatcttcagtttaacttcttggtgagagtcacgaattgggaagccatagggttgtggttgaccataaaagttctataggcatccagctccaaaacttcc |
26455325 |
T |
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| Q |
618 |
tatg |
621 |
Q |
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|||| |
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| T |
26455326 |
tatg |
26455329 |
T |
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