View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17408_low_11 (Length: 615)
Name: NF17408_low_11
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 25 - 604
Target Start/End: Original strand, 37262832 - 37263411
Alignment:
| Q |
25 |
tttttctttttacaatctcattacatcagcaccaaacattgttgtacaaatataaaaattttgtcatcattgattacatcaccacaaataaaaagtacta |
124 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37262832 |
tttttttttttacaatctcattacatcagcaccaaacattgttgtacaaatataaaaaatttgtcatcattgattacatcaccacaaataaaaagtacta |
37262931 |
T |
|
| Q |
125 |
ctactatatatttattacacactgatgaattagaagatgtatgtggtgaagaagcagccgcatacactataaacaattcatttataacattccaccaatc |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37262932 |
ctactatatatttattacacactgatgaattagaagatgtatgtggtgaagaagcagccgcatacactataaacaattcatttataacattccaccaatc |
37263031 |
T |
|
| Q |
225 |
caacaagccttaattactatcgttgataacaataattcaccaccatggcttcagtgaagcaaaacagtgctgaagaaccactattgttcaaccacagtgg |
324 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37263032 |
caacaagccttaactactatcgttgataacaataattcaccaccatggcttcattgaagcaaaacagtgctgaagaaccactattgttcaaccacagtgg |
37263131 |
T |
|
| Q |
325 |
tacatctcagaagcaccatgaatctgatggtgagcttgaaaggatactatcagacaccaccgtgccattcttcagccgtatctgctccgccacatggatt |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37263132 |
tacatctcagaagcaccatgaatctgatggtgagcttgaaaggatactatcagacaccaccgtgccattcttcagccgtatcggctccgccacatggatt |
37263231 |
T |
|
| Q |
425 |
gagctcagactccttttcttgttggctgcaccagctgtttttgtttatcttattaattatgttatgtctatgtccacacaaatcttttccggccaccttg |
524 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37263232 |
gagctcagactccttttcttgttggctgcaccagctgtttttgtttatcttattaattatgttatgtctatgtccacacaaatcttttccggccaccttg |
37263331 |
T |
|
| Q |
525 |
gtaatcttgaacttgccgcggcgtctctgggaaacaccgggattcaaatctttgcttatggtctcatggtaagtattcat |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37263332 |
gtaatcttgaacttgccgcggcgtctctggggaacaccgggattcaaatctttgcttatggtctcatggtaagtattcat |
37263411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University