View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_low_12 (Length: 596)
Name: NF17408_low_12
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 6 - 583
Target Start/End: Complemental strand, 37518128 - 37517546
Alignment:
| Q |
6 |
agttcagcgatatcaattactcaattaatctaaagaaaaaatatatatttccttataatgtgactggataaagtatgtttgatgacaatgagcctataaa |
105 |
Q |
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| T |
37518128 |
agttcagcgatatcaattactcaattaatctaaagaaaaaatatatatttccttataatgtgactggataaagtatgtttgatggcaatgagcctataaa |
37518029 |
T |
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| Q |
106 |
ttggatccgttaaacttgagaaattgagaatgaactc-gtgaattagtacatatacaaaaaatggtgtgaacatgccgttatagaaatggaaggaaaaac |
204 |
Q |
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| T |
37518028 |
ttggatccgttaaacttgagaaattgagaatgaactcagtgaattagtacatatacaaaaaatggtgtgaacatgccgttatagaaatggaaggaaaaac |
37517929 |
T |
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| Q |
205 |
aaaagtaaacggtcattttggtttctaaatatatgttt---cccgttgtcataatgaattaatgatcactaacttgtgaaaacattaaaaaa-gtctctg |
300 |
Q |
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| T |
37517928 |
aaaagtaaacggtcattttggtttctaaatatatgtattatctcgttgtcataatgaattaatgatcactaacttgtgaaaacattaaaaaaagtctctg |
37517829 |
T |
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| Q |
301 |
actctaaatctggtagccattttggtacctaacgttaaattttgacatttttcacaaaataactggattggcatttctttggagacatgtaagttgtggc |
400 |
Q |
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| T |
37517828 |
actctaaatctgctagccattttggtccctaacgttaaattttgacatttttcacaaaataactggattggcatttctttggagacatgtaagttgtggc |
37517729 |
T |
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| Q |
401 |
aacaatgattaaaatgaaaaaacaaccgtcatctctatcaacaactacattcatatcatcttccccaatccaacccacaacaataatcatcttttctgga |
500 |
Q |
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||||||||||||||||||| |||| | |||||||| ||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||| |
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| T |
37517728 |
aacaatgattaaaatgaaataacatcattcatctctttcaacaactacattcatatcatcttcctcaatccaacccataaaaataatcatcttttctgga |
37517629 |
T |
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| Q |
501 |
ttaaattgaggaagatgagatgaatgatgatgttgaaaagctgaagagtgtataaccaaataaaagaaagagaagaagagtgt |
583 |
Q |
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| T |
37517628 |
ttaaattgaggaagatgagatgaatgatgctgttgaaaagatgaagagtgtataaccaaataaaagaaagagataaagagtgt |
37517546 |
T |
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