View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_low_13 (Length: 580)
Name: NF17408_low_13
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 15 - 565
Target Start/End: Original strand, 4947716 - 4948290
Alignment:
| Q |
15 |
gaaaagaaataggacagcttttatttctcggacccaaagagtagacatnnnnnnnctcgggattaaattgttccattttctttactcagaaactaaaaat |
114 |
Q |
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| T |
4947716 |
gaaaagaaataggacagcttttatttctcggacccaaagaatagacataaaaaaactagggattaaattgttccattttcttttctcagaaactaaaaat |
4947815 |
T |
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| Q |
115 |
tgtttttattgatcattttctatgatcaaatta-----------ggtatctaannnnnnnnataatttaaattttatagttgtgag-------------t |
190 |
Q |
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| T |
4947816 |
tgtttttattgatcattttctatgatcaaattagggatcaactcgggatcaaaaaaaatttataatttaaattttatagttgtgagtaatgtttgtgagt |
4947915 |
T |
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| Q |
191 |
aatgttctacttacactgggtgcaactaattttactaattagtgaataaacacacacatgcaagcttaacctagataagttaaacctgaatatcaattgc |
290 |
Q |
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| T |
4947916 |
aatgttctacttacactgggtgcaactaattttactaattagtgaataaacacacacatgcaagcttaacctagataagttaaacctgaatatcaattgc |
4948015 |
T |
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| Q |
291 |
aatatttatattgtactaagcattgaattaatgtattcaatattatggtatgtgcagatggacaaagcttctgtgttgggagatgctaccaagtacatga |
390 |
Q |
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| T |
4948016 |
aatatttatattgtactaagcattgaattaatgtattcaatattatggtatgtgcagatggacaaagcttctgtgttgggagatgctaccaagtacatga |
4948115 |
T |
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| Q |
391 |
aacaactacaggcacgtttgcagacactggaggaacaagctgaagacaacaaaaaagctggatccacagtccaagtgaagagatctattatcttcactaa |
490 |
Q |
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| T |
4948116 |
aacaactacaggcacgtttgcagacactggaggaacaagctgaagacaacaaaaaagctggatccacagtccaagtgaagagatctattatcttcactaa |
4948215 |
T |
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| Q |
491 |
taataatgatgatgatagcaactccaataaccaaccacttcctgaaatcgaagtaagagtttcaagcaaagatgt |
565 |
Q |
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| T |
4948216 |
taataatgatgatgatagcaactccaataaccaaccacttcctgaaatcgaagtaagagtttcaagcaaagatgt |
4948290 |
T |
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