View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_low_14 (Length: 549)
Name: NF17408_low_14
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 19 - 405
Target Start/End: Complemental strand, 8467783 - 8467380
Alignment:
| Q |
19 |
atcatggaatattaccttcatattcatcttctattatcaataaaggacatcatcattt-----------------aggaaacaaaaaacttgacttaata |
101 |
Q |
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| T |
8467783 |
atcatggaatattaccttcatattcatcttctattatcaataaaggacatcatcatcttccttcatttcatatataggaaacaaaaaacttgacttaata |
8467684 |
T |
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| Q |
102 |
atttgtttggtaaagtaaagaaaaatagaaaactaatttcccccaacctcgctgatctgatcaccatagatataatatgagcctcttctaatgtaaacct |
201 |
Q |
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| T |
8467683 |
atttgtttggtaaagtaaagaaaaatagaaaactaatttcccccaacctcgctgatctgatcaccatagatataagatgagcctcttctaatgtaaacct |
8467584 |
T |
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| Q |
202 |
agcctcatccaagaataaattactagaaaataaaggcatgggaaagtaggaaaacataaaccagctgctagctagggttttcatcaaacaagatggatta |
301 |
Q |
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| T |
8467583 |
agcctcatccaagaataaattactagaaaataaaggcatgggaaagtaggaaaacataaaccagctgctagctagggttttcatcaaacaagatggatta |
8467484 |
T |
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| Q |
302 |
tatgcatacaatggtgattgtatgaaataataaatgaattattaataaaatagaacaagctattttcacaaattaagctctgacactgcacacaagcata |
401 |
Q |
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| T |
8467483 |
tatgcatacaatggtgattgtatgaaataataaatgaattattaataaaatagaacaagctattttcacaaattaagctctgacactgcacacaaccata |
8467384 |
T |
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| Q |
402 |
ctag |
405 |
Q |
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|||| |
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| T |
8467383 |
ctag |
8467380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 476 - 546
Target Start/End: Complemental strand, 8467313 - 8467243
Alignment:
| Q |
476 |
gtgatttagagcagaaagctggtagtgcttgacagctctcgtggtcattagaataaggcacaagctcatca |
546 |
Q |
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| T |
8467313 |
gtgattcagggcagaaagctggttgtgcttgatagctctcgtggtagttagagttaggcacaagttcatca |
8467243 |
T |
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