View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_low_17 (Length: 518)
Name: NF17408_low_17
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 18 - 500
Target Start/End: Complemental strand, 45148145 - 45147664
Alignment:
| Q |
18 |
agacagattatgtcatgaacctaattgaaagaaacaaactactacattacaatgcaaaatggtcagaaaggatttttgagaccattatccctaattttac |
117 |
Q |
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| T |
45148145 |
agacagattatgtcatgaacctaattgaaagaaacaaactactacattacaatgcaaaatggtcagaaaggatttttgagaccattatccctaattttac |
45148046 |
T |
|
| Q |
118 |
aagagaacaggtaggaagtgggagatacgtgcaactttatgcggaatacaatgtctcgtcaacttctatggcttgtccaccccattgctgtcaacttcta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45148045 |
aagagaacaggtaggaagtgggagatacgtgcaactttatgcggaatacaatgtctcgtcaacttctatggcttgtccaccccattgctgtcaacttcta |
45147946 |
T |
|
| Q |
218 |
cggtttgtccaccccattgctgcacccgtgcagatgtattatccacctacaattgagaagagtcaaatgattgaaagcagtgagaatctctaaattcatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45147945 |
cggtttgtccaccccattgctgcacccgtgcagatgtattatccacctacaattgagaagagtcaaatgattgaaagcagtgagaatctctaaattcatt |
45147846 |
T |
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| Q |
318 |
caagctagttatatcataggatagaaaaagggtgatcaatatcatttttctgttgtagtcaagcgagaaaatccaacatgagttttagaatgagaagtat |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
45147845 |
caagctagttatatcataggatagaaaaagggtgatcaata-catttttctgttgtagtcaagcgagaaaatccaacatgagtcttagaatgagaagtat |
45147747 |
T |
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| Q |
418 |
tgcctacctctttgttccaattggttttgtaaagtatccccgagagcagcaaggtctggaggagaattccacatatcatacct |
500 |
Q |
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| T |
45147746 |
tgcctacctctttgttccaattggttttgtaaagtatccccgagagcagcaaggtctggaggagaattccacatatcatacct |
45147664 |
T |
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