View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_low_2 (Length: 877)
Name: NF17408_low_2
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_2 |
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| [»] scaffold0205 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 604; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 243 - 866
Target Start/End: Original strand, 35990654 - 35991277
Alignment:
| Q |
243 |
gtttgctgtaatgagttgattttatggatgtgtaacttatcattgatgagcagggagtgtgctaagtgggggagggagtgttccagctgagaaggcatct |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35990654 |
gtttgctgtaatgagttgattttatggatgtgtaacttatcattgatgagcagggagtgtgctaagtgggggagggagtgttccagctgagaaggcatct |
35990753 |
T |
|
| Q |
343 |
gctgcgacttgggtgaaaatggtgaatcagatccaaaatgcagctttatctactcctcttgggattccaatgatttatgggatagatgctgttcatggtc |
442 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35990754 |
gctgagacttgggtgaaaatggtgaatcagatccaaaatgcagctttatctactcctcttgggattccaatgatttatgggatagatgctgttcatggtc |
35990853 |
T |
|
| Q |
443 |
acaataatgtctacaacgctactatttttcctcacaatgttggtcttggagttaccaggcaagtttatgtatatgcaggaattttaatagccatgaaatg |
542 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35990854 |
acaataatgtctacaatgctactatttttcctcacaatgttggtcttggagttaccaggcaagtttatgtatatgcaggaattttaatagccatgaaatg |
35990953 |
T |
|
| Q |
543 |
attgaaaagaagaaagaattagtagtgacattaaattcatatttgataatttgtaactggaagctatacttgaagaagtgaacctttgcgataaaaacaa |
642 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35990954 |
attgaaaagaagaaagaattagcagtgacattaaattcatatttgataatttgtaactggaagctatacttgaagaagtgaacctttgcgataaaaacaa |
35991053 |
T |
|
| Q |
643 |
accttgcaatttagtgcattttcttgcttttattgtaatggaatctactgtttattagggatccagtgctaataaaaaagattggagaagcaactgccct |
742 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35991054 |
accttgcaatttagtgcattttcttgcttttattgtaatggaatctactgtttattagggatccagtgctaataaaaaagattggagaagcaactgccct |
35991153 |
T |
|
| Q |
743 |
tgaagttagagctactggaattccatacgtgtttgctccatgtatcgcggtaaagaaacagtgtttcaatattctgttatttaaatcatatgtaacattg |
842 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35991154 |
tgaagttagagctactggaattccatatgtgtttgctccatgtatcgcggtaaagaaacagtgtttcaatattctgttatttaaatcatatgtaacattg |
35991253 |
T |
|
| Q |
843 |
atcaagtttgctgatatgatgatg |
866 |
Q |
| |
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|||||||||||||||||| ||||| |
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| T |
35991254 |
atcaagtttgctgatatgttgatg |
35991277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 35990428 - 35990628
Alignment:
| Q |
16 |
atgtgatgatagatttgtgtaaagtgtactatgtagcactaacacttcagatcaaatgtgtgtggtagactggtagtgtcggtgtccaacacttactcga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35990428 |
atgtgatgatagatttgtgtaaagtgtactatgtagcactaacacttcagatcaaatgtgtgtggtagactggtagtgtcggtgtccaacacttactcga |
35990527 |
T |
|
| Q |
116 |
cactgacacatgtggtgacattcagttattttattttctcaagttattatcagtgttgacggggtagtgtggtgtctggtgtcagtgtttcgtagaaatg |
215 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35990528 |
cactgacacatgtggttacattcagttattttattttctcaaattattatcagtgtcgacggggtagtgtggtgtctggtgttagtgtttcgtagaaatg |
35990627 |
T |
|
| Q |
216 |
g |
216 |
Q |
| |
|
| |
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|
| T |
35990628 |
g |
35990628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 400 - 493
Target Start/End: Original strand, 9989709 - 9989802
Alignment:
| Q |
400 |
cttgggattccaatgatttatgggatagatgctgttcatggtcacaataatgtctacaacgctactatttttcctcacaatgttggtcttggag |
493 |
Q |
| |
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||||| ||||||||||||||||| || |||||||||||||| | |||||||| || || ||||||||||||||||||||||||||||| |||| |
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| T |
9989709 |
cttggaattccaatgatttatggaattgatgctgttcatggaaataataatgtatataaagctactatttttcctcacaatgttggtctaggag |
9989802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 400 - 486
Target Start/End: Original strand, 9996109 - 9996195
Alignment:
| Q |
400 |
cttgggattccaatgatttatgggatagatgctgttcatggtcacaataatgtctacaacgctactatttttcctcacaatgttggt |
486 |
Q |
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||||| ||||||||||| ||||| || |||||||||||||| | ||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
9996109 |
cttggaattccaatgatatatggaattgatgctgttcatggaaataataatgtctataacgcaactatttttcctcacaatgttggt |
9996195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 400 - 486
Target Start/End: Original strand, 10002034 - 10002120
Alignment:
| Q |
400 |
cttgggattccaatgatttatgggatagatgctgttcatggtcacaataatgtctacaacgctactatttttcctcacaatgttggt |
486 |
Q |
| |
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||||| ||||||||||| ||||| || |||||||||||||| | ||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
10002034 |
cttggaattccaatgatatatggaattgatgctgttcatggaaataataatgtctataacgcaactatttttcctcacaatgttggt |
10002120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 400 - 493
Target Start/End: Original strand, 10011588 - 10011681
Alignment:
| Q |
400 |
cttgggattccaatgatttatgggatagatgctgttcatggtcacaataatgtctacaacgctactatttttcctcacaatgttggtcttggag |
493 |
Q |
| |
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||||| ||||||||||||||||| || |||||||||||||| || || ||||| || || ||||||||||| ||||||||||||||||| |||| |
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| T |
10011588 |
cttggaattccaatgatttatggaattgatgctgttcatggacataacaatgtttataaagctactattttccctcacaatgttggtctaggag |
10011681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 720 - 769
Target Start/End: Original strand, 9990262 - 9990311
Alignment:
| Q |
720 |
aagattggagaagcaactgcccttgaagttagagctactggaattccata |
769 |
Q |
| |
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|||||||| || |||||||| ||||||| |||||| |||||||||||||| |
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| T |
9990262 |
aagattggtgatgcaactgctcttgaagctagagcaactggaattccata |
9990311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 406 - 507
Target Start/End: Complemental strand, 11247194 - 11247093
Alignment:
| Q |
406 |
attccaatgatttatgggatagatgctgttcatggtcacaataatgtctacaacgctactatttttcctcacaatgttggtcttggagttaccaggcaag |
505 |
Q |
| |
|
||||| ||||| ||||| || ||||| |||||||| |||||||||||||| || ||||| || ||||| || |||||||| |||||| ||||||||||| |
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| T |
11247194 |
attcccatgatgtatggtattgatgccgttcatggacacaataatgtctataatgctaccatatttccccataatgttgggcttggatgtaccaggcaag |
11247095 |
T |
|
| Q |
506 |
tt |
507 |
Q |
| |
|
|| |
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|
| T |
11247094 |
tt |
11247093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 400 - 508
Target Start/End: Complemental strand, 33356936 - 33356828
Alignment:
| Q |
400 |
cttgggattccaatgatttatgggatagatgctgttcatggtcacaataatgtctacaacgctactatttttcctcacaatgttggtcttggagttacca |
499 |
Q |
| |
|
||||| |||||||| |||||||||| |||||||||||||| ||| ||| ||||| || |||||||||||||||||| |||| || |||| ||||| |
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| T |
33356936 |
cttggaattccaattttttatgggattgatgctgttcatggcaacagccctgtttacaaagcaactatttttcctcacaatattgggctgggagctacca |
33356837 |
T |
|
| Q |
500 |
ggcaagttt |
508 |
Q |
| |
|
|| |||||| |
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|
| T |
33356836 |
ggtaagttt |
33356828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 171
Target Start/End: Original strand, 46179910 - 46179968
Alignment:
| Q |
113 |
cgacactgacacatgtggtgacattcagttattttattttctcaagttattatcagtgt |
171 |
Q |
| |
|
|||||| |||||||||| | | ||||| ||| ||||||||||||| ||||||||||||| |
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|
| T |
46179910 |
cgacaccgacacatgtgattatattcaattaatttattttctcaacttattatcagtgt |
46179968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 171
Target Start/End: Complemental strand, 43328546 - 43328468
Alignment:
| Q |
93 |
gtcggtgtccaacacttactcgacactgacacatgtggtgacattcagttattttattttctcaagttattatcagtgt |
171 |
Q |
| |
|
|||||||||| |||| || ||||| ||||||||||||| ||||| | |||||| |||||||||| ||||||| ||||| |
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|
| T |
43328546 |
gtcggtgtccgacaccaacacgacaatgacacatgtggttacattaaattatttcattttctcaaattattataagtgt |
43328468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 31614195 - 31614135
Alignment:
| Q |
113 |
cgacactgacacatgtggtgacattcagttattttattttctcaagttattatcagtgttg |
173 |
Q |
| |
|
|||||||||||||| |||| ||| | |||||||| |||||||||| |||||||||||||| |
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|
| T |
31614195 |
cgacactgacacatatggttacaattagttatttcattttctcaaactattatcagtgttg |
31614135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0205 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0205
Description:
Target: scaffold0205; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 157
Target Start/End: Complemental strand, 21473 - 21431
Alignment:
| Q |
115 |
acactgacacatgtggtgacattcagttattttattttctcaa |
157 |
Q |
| |
|
||||||| ||||||||| ||||||| ||||||||||||||||| |
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|
| T |
21473 |
acactgatacatgtggttacattcaattattttattttctcaa |
21431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 177
Target Start/End: Complemental strand, 2512799 - 2512757
Alignment:
| Q |
135 |
attcagttattttattttctcaagttattatcagtgttgacgg |
177 |
Q |
| |
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||||| ||||||||||||||||| |||||| |||||||||||| |
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|
| T |
2512799 |
attcaattattttattttctcaaattattaccagtgttgacgg |
2512757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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