View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17408_low_20 (Length: 453)

Name: NF17408_low_20
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17408_low_20
NF17408_low_20
[»] chr4 (9 HSPs)
chr4 (175-384)||(35205989-35206198)
chr4 (18-126)||(35205885-35205993)
chr4 (53-185)||(20525960-20526092)
chr4 (286-325)||(38636114-38636153)
chr4 (353-387)||(42915257-42915291)
chr4 (41-105)||(25790865-25790930)
chr4 (49-101)||(37603236-37603288)
chr4 (154-186)||(50648813-50648845)
chr4 (351-387)||(51296227-51296263)
[»] chr1 (1 HSPs)
chr1 (50-178)||(4816727-4816855)
[»] chr3 (3 HSPs)
chr3 (43-126)||(25501022-25501105)
chr3 (43-105)||(50509470-50509532)
chr3 (352-384)||(19623293-19623325)
[»] chr2 (4 HSPs)
chr2 (351-387)||(19695718-19695754)
chr2 (41-107)||(7119839-7119905)
chr2 (354-387)||(10216864-10216897)
chr2 (355-387)||(39285854-39285886)
[»] chr8 (4 HSPs)
chr8 (44-115)||(3664977-3665048)
chr8 (56-186)||(15074320-15074450)
chr8 (351-387)||(7678729-7678765)
chr8 (351-387)||(30170767-30170803)
[»] chr6 (3 HSPs)
chr6 (352-387)||(1196056-1196091)
chr6 (350-387)||(3180030-3180067)
chr6 (351-387)||(32853182-32853218)
[»] chr7 (3 HSPs)
chr7 (43-105)||(3099998-3100060)
chr7 (349-387)||(48395243-48395281)
chr7 (41-105)||(4097923-4097987)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 175 - 384
Target Start/End: Original strand, 35205989 - 35206198
Alignment:
Q  175 tacaaaacttatatttgtattttattgtaacatagctctacatgtagccatgatattgccaaatacataatggttatttgatctatcaatagtgttgact 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35205989 tacaaaacttatatttgtattttattgtaacatagctctacatgtagccatgatattgccaaatacataatggttatttaatctatcaatagtgttgact 35206088  T
Q  275 accactagcttacaaattgaccgcgaacaaatcacgaagcttatgtgtttggaggaatactctacccacaatagacaaagagaaatgatgtttgtacaat 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35206089 accactagcttacaaattgaccgcgaacaaatcacgaagcttatgtgtttggaggaatactctacccacaatagacaaagagaaatgatgtttgtacaat 35206188  T
Q  375 cactttttga 384  Q
    ||||||||||    
T  35206189 cactttttga 35206198  T

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Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 35205885 - 35205993
Alignment:
Q  18 gtgagttgtttatttatcttctccaaaaagtaacttatattatttcattcagcataatagttgtaatacaaaatagaatcaaatcaaaaaattggtgatg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35205885 gtgagttgtttatttatcttctccaaaaagtaacttatattatttcattcagcataatagttgtaatacaaaatagaatcaaatcaaagaattggtgatg 35205984  T
Q  118 aacatacaa 126  Q
    |||||||||    
T  35205985 aacatacaa 35205993  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 185
Target Start/End: Original strand, 20525960 - 20526092
Alignment:
Q  53 tatattatttcattcagcataatagttgtaatacaaaatagaatcaaatcaaaaaattggtgatgaacatacaactctgacgtctttgttaagttatgaa 152  Q
    |||||||||||||||| || | |||| |||||| || ||   |||||||| || |  || ||| || ||||||||| |||  |||||  |||  ||||||    
T  20525960 tatattatttcattcatcaaagtagtagtaataaaagattagatcaaatcgaagatatgatgacgagcatacaactttgaaatctttactaaactatgaa 20526059  T
Q  153 cgacataatttgtttgtctctttacaaaactta 185  Q
    |||||||||||| ||||||||||||||||||||    
T  20526060 cgacataatttgcttgtctctttacaaaactta 20526092  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 325
Target Start/End: Complemental strand, 38636153 - 38636114
Alignment:
Q  286 acaaattgaccgcgaacaaatcacgaagcttatgtgtttg 325  Q
    ||||| |||| |||||||||||||||||||||||||||||    
T  38636153 acaaaatgacagcgaacaaatcacgaagcttatgtgtttg 38636114  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 387
Target Start/End: Complemental strand, 42915291 - 42915257
Alignment:
Q  353 agagaaatgatgtttgtacaatcactttttgacaa 387  Q
    ||||||||||| |||||||||||||||||||||||    
T  42915291 agagaaatgatatttgtacaatcactttttgacaa 42915257  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 25790930 - 25790865
Alignment:
Q  41 caaaaagtaacttatattatttcattcagc-ataatagttgtaatacaaaatagaatcaaatcaaa 105  Q
    |||||||||||||||| ||||||||||| | | |||||| ||||||||| ||| ||| ||||||||    
T  25790930 caaaaagtaacttatactatttcattcatcaaaaatagtagtaatacaagataaaattaaatcaaa 25790865  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 37603236 - 37603288
Alignment:
Q  49 aacttatattatttcattcagcataatagttgtaatacaaaatagaatcaaat 101  Q
    ||||||||||||||||||||  || ||||||||||||||| || ||| |||||    
T  37603236 aacttatattatttcattcataattatagttgtaatacaagatggaaacaaat 37603288  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 50648845 - 50648813
Alignment:
Q  154 gacataatttgtttgtctctttacaaaacttat 186  Q
    |||||||||||||||||||| ||||||||||||    
T  50648845 gacataatttgtttgtctctatacaaaacttat 50648813  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 387
Target Start/End: Complemental strand, 51296263 - 51296227
Alignment:
Q  351 aaagagaaatgatgtttgtacaatcactttttgacaa 387  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  51296263 aaagagaaatgatatttgtacaatcactttatgacaa 51296227  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 178
Target Start/End: Complemental strand, 4816855 - 4816727
Alignment:
Q  50 acttatattatttcattcagcataatagttgtaatacaaaatagaatcaaatcaaaaaattggtgatgaacatacaactctgacgtctttgttaagttat 149  Q
    |||||| |||||||||||| || |||||| |||||| || ||  |||||||||||| | ||||||| || ||||||| | ||||  | ||| |||| |||    
T  4816855 acttatcttatttcattcatcaaaatagtagtaatataagatgaaatcaaatcaaagacttggtgacgagcatacaattttgactcccttgctaagctat 4816756  T
Q  150 gaacgacataatttgtttgtctctttaca 178  Q
    |  |||||||||||| ||||||| |||||    
T  4816755 gggcgacataatttgcttgtctccttaca 4816727  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 25501105 - 25501022
Alignment:
Q  43 aaaagtaacttatattatttcattcagcataatagttgtaatacaaaatagaatcaaatcaaaaaattggtgatgaacatacaa 126  Q
    |||||||||||||||||||||||||| || |||||||  ||||||| || ||||||||| ||| | | ||||| || |||||||    
T  25501105 aaaagtaacttatattatttcattcatcacaatagtttcaatacaagatggaatcaaatgaaagactcggtgacgagcatacaa 25501022  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 50509470 - 50509532
Alignment:
Q  43 aaaagtaacttatattatttcattcagcataatagttgtaatacaaaatagaatcaaatcaaa 105  Q
    |||| ||||||||||||||||||||| || |||||  ||||||||| || |||||||||||||    
T  50509470 aaaaataacttatattatttcattcatcacaatagaggtaatacaagatggaatcaaatcaaa 50509532  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 384
Target Start/End: Complemental strand, 19623325 - 19623293
Alignment:
Q  352 aagagaaatgatgtttgtacaatcactttttga 384  Q
    |||||||||||| ||||||||||||||||||||    
T  19623325 aagagaaatgatatttgtacaatcactttttga 19623293  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 387
Target Start/End: Complemental strand, 19695754 - 19695718
Alignment:
Q  351 aaagagaaatgatgtttgtacaatcactttttgacaa 387  Q
    ||||||||||||| |||||||||||||||||||||||    
T  19695754 aaagagaaatgatatttgtacaatcactttttgacaa 19695718  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 7119839 - 7119905
Alignment:
Q  41 caaaaagtaacttatattatttcattcagcataatagttgtaatacaaaatagaatcaaatcaaaaa 107  Q
    ||||| |||||||||||| ||||||||| ||| ||||   |||||||| || |||||||||||||||    
T  7119839 caaaaggtaacttatattctttcattcaacatgatagaactaatacaagatggaatcaaatcaaaaa 7119905  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 387
Target Start/End: Original strand, 10216864 - 10216897
Alignment:
Q  354 gagaaatgatgtttgtacaatcactttttgacaa 387  Q
    |||||||||| |||||||||||||||||||||||    
T  10216864 gagaaatgatatttgtacaatcactttttgacaa 10216897  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 387
Target Start/End: Original strand, 39285854 - 39285886
Alignment:
Q  355 agaaatgatgtttgtacaatcactttttgacaa 387  Q
    ||||||||| |||||||||||||||||||||||    
T  39285854 agaaatgatatttgtacaatcactttttgacaa 39285886  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 3665048 - 3664977
Alignment:
Q  44 aaagtaacttatattatttcattcagcataatagttgtaatacaaaatagaatcaaatcaaaaaattggtga 115  Q
    |||| ||||||| |||||||||| | ||| ||||| |||||||||||| ||| ||||||||| | |||||||    
T  3665048 aaagaaacttattttatttcattaatcatcatagtagtaatacaaaatggaaacaaatcaaagacttggtga 3664977  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 15074320 - 15074450
Alignment:
Q  56 attatttcattcagcataatagttgtaatacaaaatagaatcaaatcaaaaaattggtgatgaacatacaactctgacgtctttgttaagttatgaacga 155  Q
    ||||||||||||| || |||||| | |||| ||||||||||||||||||| |  || ||| || ||||||| | ||| ||| ||| ||   ||||| |||    
T  15074320 attatttcattcatcacaatagtagaaatataaaatagaatcaaatcaaagatatgttgacgagcatacaattttgatgtccttgctatactatgagcga 15074419  T
Q  156 cataatttgtttgtctctttacaaaacttat 186  Q
    || |||||| ||||||  | |||||||||||    
T  15074420 cacaatttgcttgtcttctaacaaaacttat 15074450  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 387
Target Start/End: Original strand, 7678729 - 7678765
Alignment:
Q  351 aaagagaaatgatgtttgtacaatcactttttgacaa 387  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  7678729 aaagagaaatgatatttgtacaaccactttttgacaa 7678765  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 387
Target Start/End: Complemental strand, 30170803 - 30170767
Alignment:
Q  351 aaagagaaatgatgtttgtacaatcactttttgacaa 387  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  30170803 aaagagaaatgatatttgtacaaccactttttgacaa 30170767  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 387
Target Start/End: Original strand, 1196056 - 1196091
Alignment:
Q  352 aagagaaatgatgtttgtacaatcactttttgacaa 387  Q
    |||||||||||| |||||||||||||||||||||||    
T  1196056 aagagaaatgatatttgtacaatcactttttgacaa 1196091  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 387
Target Start/End: Complemental strand, 3180067 - 3180030
Alignment:
Q  350 caaagagaaatgatgtttgtacaatcactttttgacaa 387  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  3180067 caaagagaaatgatatttgtacaatcattttttgacaa 3180030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 351 - 387
Target Start/End: Complemental strand, 32853218 - 32853182
Alignment:
Q  351 aaagagaaatgatgtttgtacaatcactttttgacaa 387  Q
    |||||||||| || |||||||||||||||||||||||    
T  32853218 aaagagaaattatatttgtacaatcactttttgacaa 32853182  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 3099998 - 3100060
Alignment:
Q  43 aaaagtaacttatattatttcattcagcataatagttgtaatacaaaatagaatcaaatcaaa 105  Q
    |||| ||||||||||||||||||||| ||  || || ||||||||| || |||||||||||||    
T  3099998 aaaaataacttatattatttcattcatcactatcgtagtaatacaagatggaatcaaatcaaa 3100060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 387
Target Start/End: Original strand, 48395243 - 48395281
Alignment:
Q  349 acaaagagaaatgatgtttgtacaatcactttttgacaa 387  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  48395243 acaaagagaaatgatatttgtacaaccactttttgacaa 48395281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 4097987 - 4097923
Alignment:
Q  41 caaaaagtaacttatattatttcattcagcataatagttgtaatacaaaatagaatcaaatcaaa 105  Q
    ||||| ||| ||||||||||||||||||  |||||||  ||||||||| ||  ||||||||||||    
T  4097987 caaaaggtagcttatattatttcattcaatataataggggtaatacaatatgaaatcaaatcaaa 4097923  T

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