View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_low_21 (Length: 453)
Name: NF17408_low_21
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 99 - 437
Target Start/End: Original strand, 53042269 - 53042603
Alignment:
| Q |
99 |
gaatattacatttttgcacgtcgaagaattgcattgcagttttgagagcagaagcatatttttgatcaatagcaccaggaggaccgggaaccggttcggg |
198 |
Q |
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| T |
53042269 |
gaatattacatttttgcacgtcgaagaattgcattgcagttttgagagcagaagcatatttttgatcaatagcaccaggaggaccgggaaccggttcggg |
53042368 |
T |
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| Q |
199 |
tttatcggaattcgagttatcgattttcttcttaacggcataaacaatagcaccaacaacaagagctagaatgacaaacgcaataaaccaaccacagcat |
298 |
Q |
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| T |
53042369 |
tttatcggaattcgagttatcgattttcttcttaacggcataaacaatagcaccaacaacaagagctagaatgacaaacgcaataaaccaaccacagcat |
53042468 |
T |
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| Q |
299 |
cctccttttgatttcgatttttctctcattatgcnnnnnnnngcgaaaatcacaaatgcagaaaacagagtttggggttttggatctagnnnnnnnnnng |
398 |
Q |
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| T |
53042469 |
cctccttttgatttcgatttttctctcattatgc-aaaaaaagcgaaaatcacaaatgcagaaaacagagtttggggttttggatctagtttttttt--- |
53042564 |
T |
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| Q |
399 |
ttgttgttgtgtgtatatgataaaatcaaaccccaaaca |
437 |
Q |
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| T |
53042565 |
ttgttgttgtgtgtatataataaaatcaaaccccaaaca |
53042603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 53042188 - 53042232
Alignment:
| Q |
18 |
aaataactatctaatatcttcctacaataaatcaaccacattgtg |
62 |
Q |
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| T |
53042188 |
aaataactatctaatatcttcctacaataaatcaaacacattgtg |
53042232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 332
Target Start/End: Complemental strand, 7482591 - 7482509
Alignment:
| Q |
250 |
accaacaacaagagctagaatgacaaacgcaataaaccaaccacagcatcctccttttgatttcgatttttctctcattatgc |
332 |
Q |
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| T |
7482591 |
accaacaacaagagccagaatcacaagcacaataaaccaaccacgacaccctccttttaacctcaatatttctctcattatgc |
7482509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 387
Target Start/End: Complemental strand, 7482472 - 7482428
Alignment:
| Q |
343 |
gaaaatcacaaatgcagaaaacagagtttggggttttggatctag |
387 |
Q |
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| T |
7482472 |
gaaagtcagaaatgcagaaaacatagtttagggttttggatctag |
7482428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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