View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_low_22 (Length: 443)
Name: NF17408_low_22
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 6e-84; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 3709425 - 3709256
Alignment:
| Q |
1 |
ttatataatatgataaaaatactcacatgctgatgcagaatagcatcaattatttttaagcaaatcccagtcacaaatcacaataagcagtaactcaagc |
100 |
Q |
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| T |
3709425 |
ttatataatatgataaaaatactcacatgctgatgcagaatagcatcaattatttttaagcaaatcccggtcacaaatcacaataagcagtaactcaagc |
3709326 |
T |
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| Q |
101 |
actgatacaaattaacctcaactattgctaatcaaatgttagtcacaacatacatgaaaacatattaaaa |
170 |
Q |
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| T |
3709325 |
actgatacaaattaacctcaactattggtaatcaaatgttagtcacaacatacaagaaaacatattaaaa |
3709256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 6 - 170
Target Start/End: Complemental strand, 3718559 - 3718394
Alignment:
| Q |
6 |
taatatgataaaaatactcacatgctgatgcagaatagcatcaattatttttaagcaaatcccagtcacaaatcacaataagcagtaactcaagcactga |
105 |
Q |
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| T |
3718559 |
taatatgataaaaatactcacatgatgatgcagaatagcatcaattatttttaagcaaatcccagtcacaaatcacaataagcagtaactcaagcactga |
3718460 |
T |
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| Q |
106 |
tacaaattaacctcaactattgctaatc-aaatgttagtcacaacatacatgaaaacatattaaaa |
170 |
Q |
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| T |
3718459 |
tataaattaacctcaaccattgctaatcaaaatgttagtcacaacatacaggataacatattaaaa |
3718394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 178 - 308
Target Start/End: Complemental strand, 3717612 - 3717477
Alignment:
| Q |
178 |
ctatagtaattttctatcgtgatcgttccagctattgtactatta-----cattggttagttaaatgaaattctgattttgatctccttgatttgctagt |
272 |
Q |
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| T |
3717612 |
ctatattaattttctcttgtgatcgttccggctgttgtactattatattacattggcttgttaaatgaaattctgattttcatctctttaatttgcttgt |
3717513 |
T |
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| Q |
273 |
tccgtttgcattccttagagagattgaccaagtaag |
308 |
Q |
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| T |
3717512 |
tcagcttgcatcccttagacagattaaccaagtaag |
3717477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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