View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_low_23 (Length: 434)
Name: NF17408_low_23
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 16 - 418
Target Start/End: Original strand, 45550111 - 45550512
Alignment:
| Q |
16 |
aaaatcggaaacttccgttgaattgtcttactcaccttccccacatggatcagtgtctttgatttgataattgggaagagtatatgcctcagcaggaggg |
115 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45550111 |
aaaatcggaaacttc-gttgaattgtcttactcaccttccccacttggatcagtgtctttgatttgataattgggaagagtatatgcctcagcaggaggg |
45550209 |
T |
|
| Q |
116 |
tattcaatgtcgacaacagatgactggatttttggttctgtggtaggttttgactcatcatgcacattcattctctcgagagattcctcgagtggtgtaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45550210 |
tattcaatgtcgacaacagatgactggatttttggttctgtggtaggttttgactcatcatgcacattcattctctcgagagattcctcgagtggtgtaa |
45550309 |
T |
|
| Q |
216 |
tgtcttttatttcatcactttctggaagccaacacacatgaaagtattaactcaatggaaaacaaattgttagggtcactggagaaagagtaaaattcac |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
45550310 |
tgtcttttatttcatcactttctggaagccaacacacatgaaagtattaactcaatggaaaacaaattgttagtgtcactggagaaagagtaaaattcac |
45550409 |
T |
|
| Q |
316 |
attttatcctaatccaagaaatttattgaatctcaatgtaaataaaaatgaacgtctctattgtcttgtattattttcattgaatctatttttaacaaaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45550410 |
attttatcctaatccaagaaatttattgaatctcaatgtaaataaaaatgaacgtctctattgtcttgtattgttttcattgaatctatttttaacaaaa |
45550509 |
T |
|
| Q |
416 |
ctt |
418 |
Q |
| |
|
||| |
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|
| T |
45550510 |
ctt |
45550512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 112 - 265
Target Start/End: Original strand, 45545035 - 45545188
Alignment:
| Q |
112 |
agggtattcaatgtcgacaacagatgactggatttttggttctgtggtaggttttgactcatcatgcacattcattctctcgagagattcctcgagtggt |
211 |
Q |
| |
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|||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
45545035 |
agggtattcagtgtcagcaacatatgactggatttttggttctgtggtaggttttgactcgtcatgcacattcattctctcaagagattcctcgagtggt |
45545134 |
T |
|
| Q |
212 |
gtaatgtcttttatttcatcactttctggaagccaacacacatgaaagtattaa |
265 |
Q |
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|| ||||||||||||||||||||| ||| |||||||| || ||||||||||||| |
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| T |
45545135 |
gttatgtcttttatttcatcacttcctgtaagccaacgcaaatgaaagtattaa |
45545188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 105 - 258
Target Start/End: Original strand, 45544125 - 45544281
Alignment:
| Q |
105 |
cagcaggagggtattcaatgtcgacaacagatgactggatttttggttctgtggtaggttttg---actcatcatgcacattcattctctcgagagattc |
201 |
Q |
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|||||| ||||||||||||||| |||| ||| ||||||||||| ||| |||||||| |||| ||||||||||||||||||||||| |||||||| |
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| T |
45544125 |
cagcagaagggtattcaatgtcagtaacaaatggctggatttttgtttcagtggtaggatttggttcatcatcatgcacattcattctctcaagagattc |
45544224 |
T |
|
| Q |
202 |
ctcgagtggtgtaatgtcttttatttcatcactttctggaagccaacacacatgaaa |
258 |
Q |
| |
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||| || ||||||||||||||| |||||| |||||||| |||||||||||||||||| |
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|
| T |
45544225 |
ctcaagcggtgtaatgtcttttgtttcattactttctgtaagccaacacacatgaaa |
45544281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 129 - 264
Target Start/End: Original strand, 45548928 - 45549063
Alignment:
| Q |
129 |
caacagatgactggatttttggttctgtggtaggttttgactcatcatgcacattcattctctcgagagattcctcgagtggtgtaatgtcttttatttc |
228 |
Q |
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|||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||| ||| | ||||||| ||| |
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| T |
45548928 |
caacaggtggctggatttttggttctgtggtaggttttggctcatcatgcacattcattctctctagagattcctcaagtgctgttgtttcttttacttc |
45549027 |
T |
|
| Q |
229 |
atcactttctggaagccaacacacatgaaagtatta |
264 |
Q |
| |
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| ||||| ||| || |||||| |||||||| ||||| |
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| T |
45549028 |
accacttcctgtaaaccaacatacatgaaattatta |
45549063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 105 - 231
Target Start/End: Original strand, 45549819 - 45549948
Alignment:
| Q |
105 |
cagcaggagggtattcaatgtcgacaacagatgactggatttttggttctgtggtaggttttgactcat---catgcacattcattctctcgagagattc |
201 |
Q |
| |
|
||||||||||||||||| |||| |||||||| |||||| ||| |||||||||||||||||| ||||| ||||||||||||||||||| |||||||| |
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| T |
45549819 |
cagcaggagggtattcagtgtcagtaacagatggctggatatttcgttctgtggtaggttttggctcatcatcatgcacattcattctctcaagagattc |
45549918 |
T |
|
| Q |
202 |
ctcgagtggtgtaatgtcttttatttcatc |
231 |
Q |
| |
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||| |||||| ||||||||||| ||||||| |
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| T |
45549919 |
ctcaagtggtttaatgtcttttctttcatc |
45549948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 45549605 - 45549680
Alignment:
| Q |
32 |
gttgaattgtcttactcaccttccccacatggatcagtgtctttgatttgataattgggaagagtatatgcctcag |
107 |
Q |
| |
|
||||||||| | |||||||||| ||||| || ||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
45549605 |
gttgaattgacctactcacctttcccacttgaatcagcgtctttggtttgataattgggaagagtatatgcctcag |
45549680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 45550837 - 45550909
Alignment:
| Q |
33 |
ttgaattgtcttactcaccttccccacatggatcagtgtctttgatttgataattgggaagagtatatgcctc |
105 |
Q |
| |
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|||||||| | ||||||||| | |||| ||||||||| |||||| ||||||||||||||||||||||| |||| |
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| T |
45550837 |
ttgaattggcctactcacctgcaccacttggatcagtttctttggtttgataattgggaagagtatattcctc |
45550909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 401
Target Start/End: Original strand, 45544343 - 45544410
Alignment:
| Q |
334 |
aaatttattgaatctcaatgtaaataaaaatgaacgtctctattgtcttgtattattttcattgaatc |
401 |
Q |
| |
|
||||| ||||||| |||||||||||||||| ||| | ||||||| ||| |||||||||||||||||| |
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|
| T |
45544343 |
aaattgattgaatatcaatgtaaataaaaaagaatgagtctattgacttatattattttcattgaatc |
45544410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 45545621 - 45545685
Alignment:
| Q |
44 |
tactcaccttccccacatggatcagtgtctttgatttgataattgggaagagtatatgcctcagc |
108 |
Q |
| |
|
|||||||||||| || ||||| |||||||||| |||| ||| |||||| ||||||||||||||| |
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|
| T |
45545621 |
tactcaccttcctcatttggattagtgtctttggtttggtaagtgggaaaagtatatgcctcagc |
45545685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 311 - 417
Target Start/End: Complemental strand, 19670993 - 19670886
Alignment:
| Q |
311 |
ttcacattttatcctaa-tccaagaaatttattgaatctcaatgtaaataaaaatgaacgtctctattgtcttgtattattttcattgaatctattttta |
409 |
Q |
| |
|
||||||||||||| || ||||| ||||| |||||||| ||||| ||||||||||||| | | ||||||||||||||||||||||||||| |||||||| |
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|
| T |
19670993 |
ttcacattttatcttatctccaaaaaattgattgaatcacaatgcaaataaaaatgaatgaatatattgtcttgtattattttcattgaatatattttta |
19670894 |
T |
|
| Q |
410 |
acaaaact |
417 |
Q |
| |
|
|||||||| |
|
|
| T |
19670893 |
acaaaact |
19670886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 275
Target Start/End: Complemental strand, 19692064 - 19691998
Alignment:
| Q |
210 |
gtgtaatgtcttttatttcatcactttctggaagccaacacacatgaaagtattaa-ctcaatggaa |
275 |
Q |
| |
|
||||||||| |||||||| |||||||||| |||||||||| ||||||||||||| |||||||||| |
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|
| T |
19692064 |
gtgtaatgtattttatttaatcactttctatgagccaacacatatgaaagtattaatctcaatggaa |
19691998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 19671152 - 19671100
Alignment:
| Q |
140 |
tggatttttggttctgtggtaggttttgactcatcatgcacattcattctctc |
192 |
Q |
| |
|
||||||||||||||||| || ||||| | ||||||||||||||||||| |||| |
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|
| T |
19671152 |
tggatttttggttctgttgttggtttaggctcatcatgcacattcattatctc |
19671100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 334 - 417
Target Start/End: Complemental strand, 36615992 - 36615909
Alignment:
| Q |
334 |
aaatttattgaatctcaatgtaaataaaaatgaacgtctctattgtcttgtattattttcattgaatctatttttaacaaaact |
417 |
Q |
| |
|
||||| ||||||| |||||| ||||||||||||| | ||||||||||||||||||||||| ||||| |||||||||||||||| |
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|
| T |
36615992 |
aaattgattgaatgtcaatgcaaataaaaatgaatgagtctattgtcttgtattattttcactgaatttatttttaacaaaact |
36615909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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