View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_low_24 (Length: 425)
Name: NF17408_low_24
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 44477952 - 44477538
Alignment:
| Q |
1 |
atgatttcttttgccattttctttgccttccaagctacatggaaagatacacctactgaatgtttcctcctcaagtccttcattatatctttgacaggca |
100 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44477952 |
atgatttctttagccattttctttgccttccaagctacatggaaagatacacccactgaatatttcctcctcaagtccttcattatatctttgacaggca |
44477853 |
T |
|
| Q |
101 |
tgtcaccagttgtcattatctttggaagcacttcctttgtcacccacttggaagtagcaattgnnnnnnnaatggacttagcacatgtgtggtccccaac |
200 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||| |
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| T |
44477852 |
tatcaccagttgtcattatctttggaagcacttcctttgtcacccacttggaagtagcaattgtttttttaatagacttggcacatgtgtggtccccact |
44477753 |
T |
|
| Q |
201 |
taatgtctttattttaaatgtgtggctgtctgccactttgctacaataaaccacataattgcacttggtatctttacacactgccctacatctttccttg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
44477752 |
taatgtctttattttaaatgtgtggctgtctgccactttgctacaatgaaccacataattgcattttatatctttacacactgccctacatctttccttg |
44477653 |
T |
|
| Q |
301 |
tcctgtttcacaaactttatctgccttaaatttaatacagaccactcactaattgcctccttgaactctgcaattgacttaaagtccataccaactttga |
400 |
Q |
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|| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44477652 |
tcttgtttcacaaactttatctgtcttaagtttaatactgaccactcactaattgcctccttgaactctgcaattgacttaaagtccataccaactttga |
44477553 |
T |
|
| Q |
401 |
acttatagtcctttg |
415 |
Q |
| |
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||||||||||||||| |
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| T |
44477552 |
acttatagtcctttg |
44477538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 21976226 - 21976640
Alignment:
| Q |
1 |
atgatttcttttgccattttctttgccttccaagctacatggaaagatacacctactgaatgtttcctcctcaagtccttcattatatctttgacaggca |
100 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21976226 |
atgatttctttagccattttctttgccttccaagctacatggaaagatacacccactgaatatttcctcctcaagtccttcattatatctttgacaggca |
21976325 |
T |
|
| Q |
101 |
tgtcaccagttgtcattatctttggaagcacttcctttgtcacccacttggaagtagcaattgnnnnnnnaatggacttagcacatgtgtggtccccaac |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||| |
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| T |
21976326 |
catcaccagttgtcattatctttggaagcacttcctttgtcacccacttggaagtagcaattgtttttttaatagacttggcacatgtgtggtccccact |
21976425 |
T |
|
| Q |
201 |
taatgtctttattttaaatgtgtggctgtctgccactttgctacaataaaccacataattgcacttggtatctttacacactgccctacatctttccttg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
21976426 |
taatgtctttattttaaatgtgtggctgtctgccactttgctacaatgaaccacataattgcattttatatctttacacactgccctacatctttccttg |
21976525 |
T |
|
| Q |
301 |
tcctgtttcacaaactttatctgccttaaatttaatacagaccactcactaattgcctccttgaactctgcaattgacttaaagtccataccaactttga |
400 |
Q |
| |
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|| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21976526 |
tcttgtttcacaaactttatctgtcttaagtttaatactgaccactcactaattgcctccttgaactctgcaattgacttaaagtccataccaactttga |
21976625 |
T |
|
| Q |
401 |
acttatagtcctttg |
415 |
Q |
| |
|
||||||||||||||| |
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|
| T |
21976626 |
acttatagtcctttg |
21976640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 182 - 401
Target Start/End: Original strand, 13650449 - 13650674
Alignment:
| Q |
182 |
cacatgtgtggtccccaactaatgtctttattttaaatgtgtggctgtctgccactttgctacaataaaccacataattgcac---ttgg---tatcttt |
275 |
Q |
| |
|
|||||||||||||| || | ||||||||||||||| |||| ||||||| ||||||||||| || | ||||||| |||||| ||| |||| || |
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| T |
13650449 |
cacatgtgtggtccacacccaatgtctttattttatatgtatggctgttagccactttgctgcagtgggccacatacttgcaccccttgtgcttatcctt |
13650548 |
T |
|
| Q |
276 |
acacactgccctacatctttccttgtcctgtttcacaaactttatctgccttaaatttaatacagaccactcactaattgcctccttgaactctgcaatt |
375 |
Q |
| |
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|||| || ||||||| ||||||||||| | |||||||||||| || || | |||||||||| | |||| || || ||| |||||||||||||| |
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| T |
13650549 |
acactctaccctacacctttccttgtcatttttcacaaacttaatttgatatccatttaatacattcaactccctcatggccattctgaactctgcaatt |
13650648 |
T |
|
| Q |
376 |
gacttaaagtccataccaactttgaa |
401 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
13650649 |
gacttaaagtccataccaactttgaa |
13650674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 182 - 401
Target Start/End: Complemental strand, 47734745 - 47734520
Alignment:
| Q |
182 |
cacatgtgtggtccccaactaatgtctttattttaaatgtgtggctgtctgccactttgctacaataaaccacataattgcac---ttgg---tatcttt |
275 |
Q |
| |
|
|||||||||||||| || | ||||||||||||||| |||| ||||||| ||||||||||| || | ||||||| |||||| ||| |||| || |
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| T |
47734745 |
cacatgtgtggtccacacccaatgtctttattttatatgtatggctgttagccactttgctgcagtgggccacatacttgcaccccttgtgcttatcctt |
47734646 |
T |
|
| Q |
276 |
acacactgccctacatctttccttgtcctgtttcacaaactttatctgccttaaatttaatacagaccactcactaattgcctccttgaactctgcaatt |
375 |
Q |
| |
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|||| || ||||||| ||||||||||| | |||||||||||| || || | |||||||||| | |||| || || ||| |||||||| ||||| |
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|
| T |
47734645 |
acactctaccctacacctttccttgtcatttttcacaaacttaatttgatatccatttaatacattctactcccttatggccattctgaactcttcaatt |
47734546 |
T |
|
| Q |
376 |
gacttaaagtccataccaactttgaa |
401 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
47734545 |
gacttaaagtccataccaactttgaa |
47734520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 182 - 401
Target Start/End: Complemental strand, 35598206 - 35597981
Alignment:
| Q |
182 |
cacatgtgtggtccccaactaatgtctttattttaaatgtgtggctgtctgccactttgctacaataaaccacataattgcac---ttgg---tatcttt |
275 |
Q |
| |
|
||||||||||| || || | ||||||||||||||| |||| ||||||| ||||||||||| || | || |||| |||||| ||| |||| || |
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|
| T |
35598206 |
cacatgtgtgggccacacccaatgtctttattttatatgtatggctgttagccactttgctgcagtgggcctcatacttgcacccattgtgtttatcctt |
35598107 |
T |
|
| Q |
276 |
acacactgccctacatctttccttgtcctgtttcacaaactttatctgccttaaatttaatacagaccactcactaattgcctccttgaactctgcaatt |
375 |
Q |
| |
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|||| || ||||||| ||||||||||| | |||||||||||| || || | |||||||||| |||||| ||||| ||| |||||||| ||||| |
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| T |
35598106 |
acactctaccctacacctttccttgtcatttttcacaaacttaatttgatatccatttaatacattccactccctaatggccattctgaactctacaatt |
35598007 |
T |
|
| Q |
376 |
gacttaaagtccataccaactttgaa |
401 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
35598006 |
gacttaaagtccataccaactttgaa |
35597981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 41771976 - 41772036
Alignment:
| Q |
182 |
cacatgtgtggtccccaactaatgtctttattttaaatgtgtggctgtctgccactttgct |
242 |
Q |
| |
|
||||||||||| || | | ||||||||||||||| |||| ||||||| |||||||||||| |
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|
| T |
41771976 |
cacatgtgtgggccatacccaatgtctttattttatatgtatggctgtttgccactttgct |
41772036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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