View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17408_low_25 (Length: 425)

Name: NF17408_low_25
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17408_low_25
NF17408_low_25
[»] chr3 (8 HSPs)
chr3 (7-407)||(24369616-24370020)
chr3 (7-395)||(24358275-24358664)
chr3 (7-407)||(24364627-24365031)
chr3 (34-407)||(24354601-24354974)
chr3 (102-407)||(24344329-24344634)
chr3 (173-407)||(24313765-24314000)
chr3 (43-407)||(24351516-24351880)
chr3 (188-407)||(24361954-24362176)


Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 7 - 407
Target Start/End: Complemental strand, 24370020 - 24369616
Alignment:
Q  7 tgaaatgaaaatcaagaaaccaaaccaa-cctcgaactttcttatgtggtcgaggagaaacaaaaggtgatctttgtttagccttcttccgattaagcca 105  Q
    ||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  24370020 tgaaaagaaaatcaagaaaccaaaccaaaccttgaactttcttatgtggtcgagaagaaacaaaaggtgatctttgtctagccttcttccgattaagcca 24369921  T
Q  106 ttcatccaaaatctcaactgatttatcatcatcactatgatcaacattgtcattttcatcatcactgtcacatgaag---aataatctatttctactgca 202  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    ||| |||||||||| ||||    
T  24369920 ttcatccaaaatctcaactgattcatcatcatcactatgatcaacattgtcattttcatcatcactgtcacatgaagtatcatagtctatttctaatgca 24369821  T
Q  203 ttccggtcaaatatgtgtacatcaaacttggaagttcctccatattcaaacaccaccaagcaaccatgtccaagagagtaattttcagtaaaagttttcc 302  Q
    |||  | ||| |||   ||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24369820 ttcttgccaagtattactacatcaaacttgaaagttcctttatattcaaacaccaccaagcaaccatgtccaagagagtaattttcagtaaaagttttcc 24369721  T
Q  303 aacccttttcaaaccaaatctcaccattgannnnnnnccaataaactttccatttagtgtcatcaggagtctttatcaccactggatttgatagaccaac 402  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24369720 aacccttttcaaaccaaatctcaccattgatttttttccaataaactttccatttagtgtcatcaggagtctttatcaccactggatttgatagaccaac 24369621  T
Q  403 tccat 407  Q
    |||||    
T  24369620 tccat 24369616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 7 - 395
Target Start/End: Complemental strand, 24358664 - 24358275
Alignment:
Q  7 tgaaatgaaaatcaagaaaccaaaccaa-cctcgaactttcttatgtggtcgaggagaaacaaaaggtgatctttgtttagccttcttccgattaagcca 105  Q
    ||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  24358664 tgaaaagaaaatcaagaaaccaaaccaaacctcgaacttttttatgtggtcgaggagaaacgaaaggtgatctttgtttagccttcttccaattaagcca 24358565  T
Q  106 ttcatccaaaatctcaactgatttatcatcatcactatgatcaacattgtcattttcatcatcactgtcacatgaagaataatctatttctactgcattc 205  Q
    ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24358564 ttcgtccaaaatctcaactgattcatcatcatcactatgatcaacattgtcattttcatcatcactgtcacatgaagaataatctatttctactgcattc 24358465  T
Q  206 cggtcaaatatgtgtacatcaaacttggaagttcctccatattcaaacaccaccaagcaaccatgtccaagagagtaattttcagtaaaagttttccaac 305  Q
    ||| |||| ||||||||||||||||||||||||| |  |||||||||||| |||||  | ||||||||||||||||||||||||||||||  ||||||||    
T  24358464 cggccaaaaatgtgtacatcaaacttggaagttcttttatattcaaacacaaccaaagagccatgtccaagagagtaattttcagtaaaatatttccaac 24358365  T
Q  306 ccttttcaaaccaaatctcaccattgannnnnnnccaataaactttccatttagtgtcatcaggagtctttatcaccactggatttgata 395  Q
    ||||||||||||||||||| |||||||       |||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||    
T  24358364 ccttttcaaaccaaatctcgccattgatttttttccaataaactttccatttagtgccatcaggaggctttatcaacactggatttgata 24358275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 7 - 407
Target Start/End: Original strand, 24364627 - 24365031
Alignment:
Q  7 tgaaatgaaaatcaagaaaccaaaccaa-cctcgaactttcttatgtggtcgaggagaaacaaaaggtgatctttgtttagccttcttccgattaagcca 105  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||    
T  24364627 tgaaaagaaaatcaagaaaccaaaccaaacctcgaactttcttatgtggtcgagtagaaataaaaggtgatctttgtctagccttcttccgattaagcca 24364726  T
Q  106 ttcatccaaaatctcaactgatttatcatcatcactatgatcaacattgtcattttcatcatcactgtcacatgaaga---ataatctatttctactgca 202  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||| ||||||   |||||||||||||||||||    
T  24364727 ttcatccaaaatctcaactgattcatcatcatcactatgatcaacattgtcattttcatcattagtgtcacttgaagaatcataatctatttctactgca 24364826  T
Q  203 ttccggtcaaatatgtgtacatcaaacttggaagttcctccatattcaaacaccaccaagcaaccatgtccaagagagtaattttcagtaaaagttttcc 302  Q
    ||| || ||| |||   ||||||||||||||||||||||  ||||||||||| |||||| || |||||| ||||||||||||||||||||||||||||||    
T  24364827 ttctggccaagtattactacatcaaacttggaagttcctttatattcaaacatcaccaaacagccatgttcaagagagtaattttcagtaaaagttttcc 24364926  T
Q  303 aacccttttcaaaccaaatctcaccattgannnnnnnccaataaactttccatttagtgtcatcaggagtctttatcaccactggatttgatagaccaac 402  Q
    |||||||||||||||| ||||| |||||||       ||||||||||||||||  |||| ||||||||  ||| |||| ||||||||| |||||||||||    
T  24364927 aacccttttcaaaccacatctcgccattgatttttttccaataaactttccatccagtgccatcaggaagcttgatcaacactggattagatagaccaac 24365026  T
Q  403 tccat 407  Q
    |||||    
T  24365027 tccat 24365031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 34 - 407
Target Start/End: Complemental strand, 24354974 - 24354601
Alignment:
Q  34 acctcgaactttcttatgtggtcgaggagaaacaaaaggtgatctttgtttagccttcttccgattaagccattcatccaaaatctcaactgatttatca 133  Q
    ||||| |||||||||||| |||||||||||||| ||||||||||||||| |||| |||||| ||||||||||||| |||||||||||||| || |   ||    
T  24354974 acctctaactttcttatgaggtcgaggagaaacgaaaggtgatctttgtctagcattcttctgattaagccattcttccaaaatctcaacagact---ca 24354878  T
Q  134 tcatcactatgatcaacattgtcattttcatcatcactgtcacatgaagaataat---ctatttctactgcattccggtcaaatatgtgtacatcaaact 230  Q
    |||||||||||||||| ||  |  || ||||||| ||  |||||||||| || ||   ||||||||||||||||| || ||| |||||||||||||||||    
T  24354877 tcatcactatgatcaatatcatttttctcatcataaccatcacatgaaggatcatagtctatttctactgcattctggccaagtatgtgtacatcaaact 24354778  T
Q  231 tggaagttcctccatattcaaacaccaccaagcaaccatgtccaagagagtaattttcagtaaaagttttccaacccttttcaaaccaaatctcaccatt 330  Q
    | |||  ||||  |||||  ||||||||||| ||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||| |||||    
T  24354777 ttgaatctcctttatatttgaacaccaccaaacaaccatgtccaagagagtaattttcaataaaatatttccaacccttttcaaaccaaatctctccatt 24354678  T
Q  331 gannnnnnnccaataaactttccatttagtgtcatcaggagtctttatcaccactggatttgatagaccaactccat 407  Q
    ||       |||||||||||||||||||||| |||| |||| ||| |||| ||||||||||||||||||||||||||    
T  24354677 gatttttttccaataaactttccatttagtgccatctggaggcttgatcaacactggatttgatagaccaactccat 24354601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 102 - 407
Target Start/End: Complemental strand, 24344634 - 24344329
Alignment:
Q  102 gccattcatccaaaatctcaactgatttatcatcatcactatgatcaacattgtcattttcatcatcactgtcacatgaagaataat---ctatttctac 198  Q
    |||||||||| ||||||||||||||||   |||||||||||||| ||||||||||||||||||||||| |||||||||||| || ||   ||||||||||    
T  24344634 gccattcatctaaaatctcaactgatt---catcatcactatgaccaacattgtcattttcatcatcagtgtcacatgaagtatcatagtctatttctac 24344538  T
Q  199 tgcattccggtcaaatatgtgtacatcaaacttggaagttcctccatattcaaacaccaccaagcaaccatgtccaagagagtaattttcagtaaaagtt 298  Q
    |||||||||  ||| |||   ||||||||| || |||||||||  ||||||||||||||||||  | ||||||||||||||||||||||||||||||  |    
T  24344537 tgcattccgaccaagtattactacatcaaatttcgaagttcctttatattcaaacaccaccaaagagccatgtccaagagagtaattttcagtaaaatat 24344438  T
Q  299 ttccaacccttttcaaaccaaatctcaccattgannnnnnnccaataaactttccatttagtgtcatcaggagtctttatcaccactggatttgatagac 398  Q
    ||||||||||||||||||||||||||||||| ||       |||||||||||||||||||||| |||| |||| ||| |||| |||||||||||||||||    
T  24344437 ttccaacccttttcaaaccaaatctcaccatcgatttttttccaataaactttccatttagtgccatctggaggcttgatcaacactggatttgatagac 24344338  T
Q  399 caactccat 407  Q
    |||||||||    
T  24344337 caactccat 24344329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 173 - 407
Target Start/End: Complemental strand, 24314000 - 24313765
Alignment:
Q  173 tcacatgaagaataatctatttctactgcattccggtcaaatatgtgtacatcaaacttggaagttcctccatattcaaacaccaccaagcaaccatgtc 272  Q
    ||||||||||||||||||||||||| ||||||| |||||| |||| ||||||||||||| |||||||||  |||||  ||||  ||||| || |||||||    
T  24314000 tcacatgaagaataatctatttctagtgcattctggtcaagtatgagtacatcaaactttgaagttcctttatatttgaacattaccaaacacccatgtc 24313901  T
Q  273 caagagagtaattttcagtaaaagttttccaacccttttcaaaccaaatctcaccattga-nnnnnnnccaataaactttccatttagtgtcatcaggag 371  Q
    |||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||        |||||| ||||||||||||||| |||||||||    
T  24313900 caagagagtaattttcagtaaaaaatttccaacccctttcaaaccaaatctcaccattgattttttttccaatacactttccatttagtgccatcaggag 24313801  T
Q  372 tctttatcaccactggatttgatagaccaactccat 407  Q
     |||||||| ||||||||||||||||||||||||||    
T  24313800 gctttatcaacactggatttgatagaccaactccat 24313765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 43 - 407
Target Start/End: Complemental strand, 24351880 - 24351516
Alignment:
Q  43 tttcttatgtggtcgaggagaaacaaaaggtgatctttgtttagccttcttccgattaagccattcatccaaaatctcaactgatttatcatcatcacta 142  Q
    ||||||||||||||||||| |||  || ||||  |||| | ||||  ||||| ||||  ||||||||||  ||||||||| ||||| ||| ||||   |     
T  24351880 tttcttatgtggtcgaggataaaataatggtggcctttttctagcaatcttctgatttcgccattcatctgaaatctcaagtgattcatcgtcat---tt 24351784  T
Q  143 tgatcaacattgtcattttcatcatcactgtcacatgaagaataat---ctatttctactgcattccggtcaaatatgtgtacatcaaacttggaagttc 239  Q
    ||| |||||||  |||||||||||||| ||||||||||||||| ||   ||||||| || |||||     ||| |||  |||||||||||||||||||||    
T  24351783 tgaccaacatttccattttcatcatcagtgtcacatgaagaatcatagtctatttcaaccgcattattaccaagtattagtacatcaaacttggaagttc 24351684  T
Q  240 ctccatattcaaacaccaccaagcaaccatgtccaagagagtaattttcagtaaaagttttccaacccttttcaaaccaaatctcaccattgannnnnnn 339  Q
    ||  ||||| |||||||||||| || ||||||   |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||           
T  24351683 ctttatatttaaacaccaccaaacatccatgttgtagagagtaattttcagtaaaatgtttccaacccttttcaaaccaaatctcaccattgattttttt 24351584  T
Q  340 ccaataaactttccatttagtgtcatcaggagtctttatcaccactggatttgatagaccaactccat 407  Q
    ||| |||||||||||||||||| ||||||||| ||| |||| ||||||||||| ||||||||||||||    
T  24351583 ccagtaaactttccatttagtgccatcaggagccttgatcaacactggatttgttagaccaactccat 24351516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 188 - 407
Target Start/End: Complemental strand, 24362176 - 24361954
Alignment:
Q  188 tctatttctactgcattccggtcaaatatgtgtacatcaaacttggaagttcctcc---atattcaaacaccaccaagcaaccatgtccaagagagtaat 284  Q
    ||||||||||||||||||  | ||| ||||||||||   ||||| ||||||||| |   ||| | ||||| ||||||  | |||||||||||||||||||    
T  24362176 tctatttctactgcattcttgccaagtatgtgtacaaggaacttagaagttccttcttcataattaaacaacaccaaaaacccatgtccaagagagtaat 24362077  T
Q  285 tttcagtaaaagttttccaacccttttcaaaccaaatctcaccattgannnnnnnccaataaactttccatttagtgtcatcaggagtctttatcaccac 384  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||       |||||||||||||||||||||  ||||||||| ||| |||| |||    
T  24362076 tttcagtaaaagttttccaacccttttcgaaccaaatctcaccattgatttttttccaataaactttccatttagttccatcaggaggcttgatcaacac 24361977  T
Q  385 tggatttgatagaccaactccat 407  Q
    ||||||||| |||||||||||||    
T  24361976 tggatttgacagaccaactccat 24361954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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