View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_low_3 (Length: 842)
Name: NF17408_low_3
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 726; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 726; E-Value: 0
Query Start/End: Original strand, 19 - 840
Target Start/End: Complemental strand, 12945719 - 12944898
Alignment:
| Q |
19 |
aaaacctccattcgtctcttcctcccgaaccctccaccgtcttcctctgctgccaaactccccattattctctacttccatggtggtggtttcatcctct |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12945719 |
aaaacctccattcgtctcttcctcccgaaccctccaccgtcttcctctgctgccaaactccccattattctctacttccatggtggtggtttcatcctct |
12945620 |
T |
|
| Q |
119 |
accacccttcctcgctcattttccaccatccctgctctacattagctgctcaaattcctgccattgttgcctcggttgattatcgtctctcgcctgagca |
218 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12945619 |
accacccttcctcgctcattttccaccacccctgctctacattagctgctcaaattcctgccattgttgcctccgttgattatcgtctctcgcctgagca |
12945520 |
T |
|
| Q |
219 |
tcgcctcccagcagcctacgatgatgcagttgattctcttctctggctcaaatcccaagctcaaaatccaacggaatctgatccatggatcagagaccat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12945519 |
tcgcctcccagcagcctacgatgatgcagttgattctcttctctggctcaaatcccaagctcaaaatccaacagaatctgatccatggatcagagaccac |
12945420 |
T |
|
| Q |
319 |
gtggactttgataaatgtttcttgatgggagacagtgccggaggtaacatagcctatttcgcaggtctacgtgctcttgacgttgatctctctcccatta |
418 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||| |
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| T |
12945419 |
gtggactttgataaatgcttcttgatgggagacagtgccggaggtaacatagcctatttcgcaggtctacgtgctctcgaccttgatctctctcacatta |
12945320 |
T |
|
| Q |
419 |
aaatccgagggatcataatgaaatatccattttttagtggggtccaaagaacggaatctgagcttcgtttggtcaacgatcgtatattaccattaccagc |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12945319 |
aaatccgagggatcataatgaaatatccattttttagtggggtccagagaacggaatctgagcttcgtttggtcaacgatcgtatattaccattaccagc |
12945220 |
T |
|
| Q |
519 |
aggtgatctcatgtggtccctgtgtttgcctgagggcaaagacagggaccacgagtattgcaatccaacaactttggatcacgtatacggtgaaaagata |
618 |
Q |
| |
|
|||||| |||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12945219 |
aggtgacctcatgtggttcctatgtttgcccgagggcaaagacagggaccacgagtattgcaatccaacaactttggatcacgtatacggtgaaaagatt |
12945120 |
T |
|
| Q |
619 |
ggacggttgccaaggtgttttgtaaatggctacggtggtgatccattggtggataagcaaaaggagctggcgaagatttttgcagcacgcggggtgcacg |
718 |
Q |
| |
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||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||| || ||||| |||||||||| |
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| T |
12945119 |
ggacggttgccaaggtgctttgttaatggctacggtggagatccattggtggataagcagaaggagctggcgaagattttggcggcacgtggggtgcacg |
12945020 |
T |
|
| Q |
719 |
tggagtcctgttttgatgaggatgggtatcatgctgtggaaatctttgatcgttctaaggcacaagttttgcttgaaaatgttaagaaatttatactctc |
818 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12945019 |
tggagtcctgttttgatgaggatgggtatcatgctgtggaaatctttgatcgttctaaggcacaagttttgcttgaaaatgttaagaaatttatactctc |
12944920 |
T |
|
| Q |
819 |
tgctgtctctgctcctcctcaa |
840 |
Q |
| |
|
|||||| |||| | |||||||| |
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|
| T |
12944919 |
tgctgtttctgttgctcctcaa |
12944898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 812
Target Start/End: Complemental strand, 12938049 - 12937254
Alignment:
| Q |
17 |
caaaaacctccattcgtctcttcctcccgaaccctccaccgtcttcctctgctgccaaactccccattattctctacttccatggtggtggtttcatcct |
116 |
Q |
| |
|
|||| |||||||| || |||||||||| ||||||||||| |||| || || || || ||||| | ||||||||||||||||||||||||||| ||| |
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| T |
12938049 |
caaacacctccatccgcatcttcctcccaaaccctccaccaccttcttccgcggctaagctccctctcattctctacttccatggtggtggtttcttccg |
12937950 |
T |
|
| Q |
117 |
ctaccacccttcctcgctcattttccaccatccctgctctacattagctgctcaaattcctgccattgttgcctcggttgattatcgtctctcgcctgag |
216 |
Q |
| |
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|||||| ||||| || || |||||||| ||||| ||||| || || ||||| || |||| ||||| |||| | |||||||| | || ||| |
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| T |
12937949 |
ctaccatccttcatccatctccttccaccaatgttgctccacattcgccgcccaaataccgattgttgtagcctcagttgctcatcgtctcactccagag |
12937850 |
T |
|
| Q |
217 |
catcgcctcccagcagcctacgatgatgcagttgattctcttctctggctcaaatcccaagctcaaaatccaacggaatctgatccatggatcagagacc |
316 |
Q |
| |
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|| || ||||| || ||||| ||||| || ||||||| | ||||||||| | ||||||| |||||||||| | ||||||||||||||||||||| |
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| T |
12937849 |
caccgtctccctgctgcctatgatgacgctattgattcattgttctggctcagagcccaagcacaaaatccaagtgtctctgatccatggatcagagaca |
12937750 |
T |
|
| Q |
317 |
atgtggactttgataaatgtttcttgatgggagacagtgccggaggtaacatagcctatttcgcaggtctacgtgctcttgacgttgatctctctcccat |
416 |
Q |
| |
|
| |||||||||||||| || |||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||| | ||||||||||| | |
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| T |
12937749 |
acgtggactttgataactgcttcttgatgggaagtagtgcaggaggtaacatagcgtacttcgcaggtctacgtgctcttgacctcgatctctctcctct |
12937650 |
T |
|
| Q |
417 |
taaaatccgagggatcataatgaaatatccattttttagtggggtccaaagaacggaatctgagcttcgtttggtcaacgatcgtatattaccattacca |
516 |
Q |
| |
|
||| |||| |||| | |||||||| ||| |||||| ||||||| || ||||| |||||||||||||||| | |||||| |||| |||| ||| || |
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|
| T |
12937649 |
taagatccaagggcttataatgaatgctccgttttttggtggggttcagagaacaaaatctgagcttcgtttcattaacgataatatactacccttatca |
12937550 |
T |
|
| Q |
517 |
gcaggtgatctcatgtggtccctgtgtttgcctgagggcaaagacagggaccacgagtattgcaatccaacaactttggatcacgtatacggtgaaaaga |
616 |
Q |
| |
|
||| |||||||||||||| |||| | |||||||||||| | ||| |||| |||| |||||| ||||||| | || |||| || | ||||| |||| |
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| T |
12937549 |
gcaagtgatctcatgtgggccctatctttgcctgagggtacagatcgggatcacgtgtattgtaatccaaaagtttcggatgtgatacatggtgagaaga |
12937450 |
T |
|
| Q |
617 |
taggacggttgccaaggtgttttgtaaatggctacggtggtgatccattggtggataagcaaaaggagctggcgaagatttttgcagcacgcggggtgca |
716 |
Q |
| |
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| |||||| |||| ||||| ||||| || ||||||||||| ||||| |||||||||| |||||||||||| | ||||||||| | ||||| |||||||| |
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|
| T |
12937449 |
tcggacggctgccgaggtgctttgttaacggctacggtggggatcccttggtggataggcaaaaggagctagtgaagattttggaggcacgtggggtgca |
12937350 |
T |
|
| Q |
717 |
cgtggagtcctgttttgatgaggatgggtatcatgctgtggaaatctttgatcgttctaaggcacaagttttgcttgaaaatgttaagaaatttat |
812 |
Q |
| |
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||||||||| |||| ||||||||||| ||||||||||||| ||||||||| | |||||||||||| || ||||| | |||||||||||||| |
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| T |
12937349 |
cgtggagtctgttttttgtgaggatgggtttcatgctgtggaactctttgatcctgctaaggcacaagcattacttgattacgttaagaaatttat |
12937254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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