View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_low_30 (Length: 399)
Name: NF17408_low_30
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_30 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 12 - 399
Target Start/End: Original strand, 33411539 - 33411926
Alignment:
| Q |
12 |
atgaactgatgaaatttccaacgcctaatgtagttgatgaatatgaagttccaatactcttcatgctttctggagcttgatcgtagaaaaactcgatttt |
111 |
Q |
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| T |
33411539 |
atgaactgatgaaatttccaacgcctaatgtagttgaagaatacgaagttccaatactcttcatgctttctggagcttgatcatagaaaaactcgatttt |
33411638 |
T |
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| Q |
112 |
cgcaacctctaaaaatgcatcagctgttcccataagtataaactgaggaagcaaaatgaaaatactcaaaggaacttgtcctccactttcaactaatcca |
211 |
Q |
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| T |
33411639 |
cgcaacctctagaaatgcatcagctgttcccataagtataaactgaggaagcaaaatgaaaatactcaaaggaacttgtcctccactttcaactaaacca |
33411738 |
T |
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| Q |
212 |
tgttcttttgccactctatgcctataattttctgtcacagaggcaactaccatgataattgtgtgtagaacaagaccaattcccattctttgaagaagcg |
311 |
Q |
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| T |
33411739 |
tgttcttttgccactctaagcctataattttctgtcacagaggcaactaccatgataattgtgtgaagaacaagaccaattcccattctttgaagaaggg |
33411838 |
T |
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| Q |
312 |
taattcctcttggattcttggttaatctctgcataatccttacaaagaaacggtcatagagcactacacagacaagcaaagacaatgt |
399 |
Q |
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| T |
33411839 |
taatccctcttggattcttggttaatctctgcataatccttacaaagaaacggtcatagagcactacacagacaagcaaggacaatgt |
33411926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 23 - 380
Target Start/End: Complemental strand, 15730185 - 15729828
Alignment:
| Q |
23 |
aaatttccaacgcctaatgtagttgatgaatatgaagttccaatactcttcatgctttctggagcttgatcgtagaaaaactcgattttcgcaacctcta |
122 |
Q |
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| T |
15730185 |
aaatttccaatgcctaagctagtcattgaataagaagtgcccaagctcttcatgctttctggagcttgatcatagaagaactcaattttagcaacctcta |
15730086 |
T |
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| Q |
123 |
aaaatgcatcagctgttcccataagtataaactgaggaagcaaaatgaaaatactcaaaggaacttgtcctccactttcaactaatccatgttcttttgc |
222 |
Q |
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||||||||||||||||||||||||||| ||| ||||| || |||||||| || ||||| |||||| ||||||| ||||||||| |||||||||||| || |
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| T |
15730085 |
aaaatgcatcagctgttcccataagtaaaaattgagggagtaaaatgaatatgctcaatggaactaatcctccattttcaactactccatgttctttggc |
15729986 |
T |
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| Q |
223 |
cactctatgcctataattttctgtcacagaggcaactaccatgataattgtgtgtagaacaagaccaattcccattctttgaagaagcgtaattcctctt |
322 |
Q |
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| T |
15729985 |
tacactaagcctatatctttcagtgaaagttgcaactaccataatcactatatgaattatgattcctatgcccatcctttgaaggagagtaattcctcta |
15729886 |
T |
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| Q |
323 |
ggattcttggttaatctctgcataatccttacaaagaaacggtcatagagcactacac |
380 |
Q |
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| T |
15729885 |
gggtttttagtccatctttgcatgatctttacaaagaaacgatcatagagcacaacac |
15729828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 48 - 237
Target Start/End: Complemental strand, 15737763 - 15737574
Alignment:
| Q |
48 |
atgaatatgaagttccaatactcttcatgctttctggagcttgatcgtagaaaaactcgattttcgcaacctctaaaaatgcatcagctgttcccataag |
147 |
Q |
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| T |
15737763 |
atgaataagaagtgccaagactcttcatgctttctggagcttgatcatagaagaactcaattttagcaacctctatgaatgcttcagctgttcccataag |
15737664 |
T |
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| Q |
148 |
tataaactgaggaagcaaaatgaaaatactcaaaggaacttgtcctccactttcaactaatccatgttcttttgccactctatgcctata |
237 |
Q |
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| T |
15737663 |
tataaattgtggaagcaaaatgaatatgctcaatggaaccaatcctccattttcaactactccatgttctttggctacactaagcctata |
15737574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 41 - 188
Target Start/End: Complemental strand, 15755864 - 15755717
Alignment:
| Q |
41 |
gtagttgatgaatatgaagttccaatactcttcatgctttctggagcttgatcgtagaaaaactcgattttcgcaacctctaaaaatgcatcagctgttc |
140 |
Q |
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|||||| | |||||||| ||||||| |||||||||||||||||| |||||||| ||||||||||| ||||| ||| ||||||||| ||| ||||| || |
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| T |
15755864 |
gtagttaaggaatatgatgttccaagactcttcatgctttctggtgcttgatcatagaaaaactccatttttgcaccctctaaaagtgcttcagccactc |
15755765 |
T |
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| Q |
141 |
ccataagtataaactgaggaagcaaaatgaaaatactcaaaggaactt |
188 |
Q |
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| T |
15755764 |
ccataagtataaattgtggtagcaaaatgaatatgcttaatggaactt |
15755717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 41 - 188
Target Start/End: Complemental strand, 15766733 - 15766586
Alignment:
| Q |
41 |
gtagttgatgaatatgaagttccaatactcttcatgctttctggagcttgatcgtagaaaaactcgattttcgcaacctctaaaaatgcatcagctgttc |
140 |
Q |
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|||||| |||| ||||| ||||||| ||||||||||||||||| |||||||| ||||||||||| ||||| ||| ||||||||| ||| ||||| || |
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| T |
15766733 |
gtagttaatgagtatgatgttccaaggctcttcatgctttctggtgcttgatcatagaaaaactccatttttgcaccctctaaaagtgcttcagccactc |
15766634 |
T |
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| Q |
141 |
ccataagtataaactgaggaagcaaaatgaaaatactcaaaggaactt |
188 |
Q |
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| T |
15766633 |
ccataagtataaattgtggaagcaaaatgaatatgcttaatggaactt |
15766586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 68 - 225
Target Start/End: Complemental strand, 15779842 - 15779685
Alignment:
| Q |
68 |
ctcttcatgctttctggagcttgatcgtagaaaaactcgattttcgcaacctctaaaaatgcatcagctgttcccataagtataaactgaggaagcaaaa |
167 |
Q |
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| T |
15779842 |
ctcttcatgctttctggggcttggtcatagaaaaactcaattttggcaccctctaagagggcttctgctattcccataagtacaaattgtggagccaaaa |
15779743 |
T |
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| Q |
168 |
tgaaaatactcaaaggaacttgtcctccactttcaactaatccatgttcttttgccac |
225 |
Q |
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|||| || ||||| ||||| ||||||||| |||||| || |||||||||||| ||||| |
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| T |
15779742 |
tgaatatgctcaatggaacctgtcctccattttcaattactccatgttctttggccac |
15779685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 371
Target Start/End: Complemental strand, 15779615 - 15779539
Alignment:
| Q |
295 |
cattctttgaagaagcgtaattcctcttggattcttggttaatctctgcataatccttacaaagaaacggtcataga |
371 |
Q |
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| T |
15779615 |
cattctttgaagaagagtaatccctctagggttcttagtcaacctctgcataatcttgacaaagaaatgttcataga |
15779539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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