View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_low_31 (Length: 398)
Name: NF17408_low_31
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 33 - 390
Target Start/End: Complemental strand, 4317479 - 4317122
Alignment:
| Q |
33 |
gtcaggcaattatatccctgacaagccagtctaaacttggatataagaagtacaagatgagaagtgacgggcgaacaaagagaattatagcaagtatata |
132 |
Q |
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| T |
4317479 |
gtcaggcaattatttccctgacaagccagtctaaacttggatatgagaagtacaagatgagaaatgacgggagagcaaagagaattgtaacaagtatata |
4317380 |
T |
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| Q |
133 |
cagagttaaaatggctgcactggctggtactgcatacaagataatcaaaagaaatataatgatcaacgggaacttagctgtcaactggacaaagaaaatc |
232 |
Q |
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| T |
4317379 |
cagagccaaaatggctgcactggctggtactgcatacaagataatcaaaagaaatataatgatcaacgggaacttagctgtcaactggacaaagaaaatc |
4317280 |
T |
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| Q |
233 |
aatgactttcgaagagatatatgcaccctttccatatcgaggtgattacgggtattagcccgaggctgactggagttcgatgtatctggagggtggactt |
332 |
Q |
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| T |
4317279 |
aatgactttcgaagagatatatgcaccctttccatatcgaggtgattgcgggtattagcccgaggctgactggagttcgatgtatctggagggtggactt |
4317180 |
T |
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| Q |
333 |
gnnnnnnntgaagatttccatggtttacttgccctcctaaggttaaattacctttgct |
390 |
Q |
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| T |
4317179 |
gccccccctgaagatttccatggtttacttgccctcctaaggttaaattacctttgct |
4317122 |
T |
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