View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17408_low_32 (Length: 392)
Name: NF17408_low_32
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_32 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 383
Target Start/End: Original strand, 27729939 - 27730299
Alignment:
| Q |
18 |
caatccatagtttaacaaaactaaaaatgtgtaaattcaattatgtcaatcctatccatgatttgttacatttgatagttaagttaatccaactcatgat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27729939 |
caatccatagtttaacaaaactaaaaatgtgtaaattcaattatgtcaatcctatccatgatttgttacatttgatagttaagttaatccaactcatgat |
27730038 |
T |
|
| Q |
118 |
ttgatgaattcagtcatgttcattcaaaaaacaaaatgaacaaattaagttacgtgtactagttcgagcgacattgccatatgctagtcgccaaatttat |
217 |
Q |
| |
|
|||||||||||||| ||||| ||| |||||| |||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27730039 |
ttgatgaattcagttatgttaattaaaaaaa----atgaacaaatta-gtaacatgtactagttcgagcgacattgccatatgctagtcgccaaatttat |
27730133 |
T |
|
| Q |
218 |
gactatacttcaacctatattatgactacattagtcgataaaatgaattaattttgttactgtaacaaaattggagcttggtaagtcaatgatactatat |
317 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27730134 |
gactatacttaaacctatattatgactacattagtggataaaatgaattaattttgttactgtaacaaaattgctgcttggtaagtcaatgatactatat |
27730233 |
T |
|
| Q |
318 |
tgtaatcctctttgctttatttaatgatgaactgtaaaaataaataaatcatagagacagaataat |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27730234 |
tgtaatcctctttgctttatttaatgatgaactgtaaaaataaataaatcatagagacagaataat |
27730299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University