View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17408_low_33 (Length: 391)

Name: NF17408_low_33
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17408_low_33
NF17408_low_33
[»] chr2 (7 HSPs)
chr2 (14-355)||(26382216-26382556)
chr2 (31-108)||(26384057-26384134)
chr2 (47-141)||(23692860-23692964)
chr2 (31-108)||(2218520-2218595)
chr2 (32-108)||(1041356-1041431)
chr2 (47-108)||(4876911-4876972)
chr2 (47-110)||(23696647-23696710)
[»] chr8 (20 HSPs)
chr8 (111-355)||(14366334-14366578)
chr8 (31-142)||(17007898-17008018)
chr8 (31-142)||(17540932-17541052)
chr8 (47-108)||(37718233-37718294)
chr8 (50-112)||(2308-2370)
chr8 (31-108)||(32231440-32231516)
chr8 (50-108)||(753459-753517)
chr8 (47-112)||(31709031-31709096)
chr8 (51-141)||(16083415-16083515)
chr8 (51-141)||(16084822-16084922)
chr8 (51-141)||(16086229-16086329)
chr8 (51-141)||(16087636-16087736)
chr8 (50-112)||(20134875-20134938)
chr8 (31-106)||(17526559-17526633)
chr8 (51-109)||(16077750-16077808)
chr8 (53-108)||(21945924-21945979)
chr8 (54-110)||(20131752-20131809)
chr8 (47-108)||(31711251-31711312)
chr8 (50-112)||(21408489-21408552)
chr8 (50-112)||(21802981-21803044)
[»] chr3 (23 HSPs)
chr3 (111-355)||(8856647-8856891)
chr3 (33-139)||(17593793-17593910)
chr3 (47-109)||(8368195-8368257)
chr3 (52-106)||(54110948-54111002)
chr3 (51-108)||(12206640-12206697)
chr3 (50-112)||(15926660-15926721)
chr3 (33-99)||(17601801-17601866)
chr3 (51-112)||(12209048-12209109)
chr3 (51-108)||(14433434-14433491)
chr3 (51-112)||(14566198-14566259)
chr3 (50-112)||(16082800-16082863)
chr3 (50-112)||(103343-103405)
chr3 (47-109)||(19767616-19767679)
chr3 (47-112)||(15417854-15417919)
chr3 (51-104)||(10807612-10807665)
chr3 (51-100)||(10811739-10811788)
chr3 (51-112)||(14429949-14430009)
chr3 (51-111)||(14561015-14561075)
chr3 (63-112)||(18556787-18556838)
chr3 (50-108)||(94485-94543)
chr3 (111-142)||(26907104-26907135)
chr3 (50-99)||(16091976-16092024)
chr3 (120-185)||(26996737-26996802)
[»] chr6 (6 HSPs)
chr6 (50-355)||(19576967-19577283)
chr6 (50-108)||(19011603-19011661)
chr6 (50-99)||(19573615-19573663)
chr6 (50-142)||(11231437-11231540)
chr6 (50-99)||(23606970-23607018)
chr6 (47-99)||(20090426-20090477)
[»] chr7 (15 HSPs)
chr7 (31-108)||(11734975-11735051)
chr7 (47-112)||(6198780-6198845)
chr7 (31-108)||(18016965-18017041)
chr7 (33-112)||(15932224-15932302)
chr7 (47-108)||(30096798-30096859)
chr7 (33-108)||(6202041-6202115)
chr7 (31-108)||(9070427-9070502)
chr7 (51-108)||(9214531-9214588)
chr7 (50-112)||(44357133-44357196)
chr7 (31-142)||(9066472-9066591)
chr7 (47-108)||(11544858-11544919)
chr7 (51-110)||(43173367-43173426)
chr7 (54-110)||(44360259-44360316)
chr7 (47-108)||(11527453-11527514)
chr7 (63-112)||(23532450-23532499)
[»] chr5 (12 HSPs)
chr5 (49-112)||(20675683-20675746)
chr5 (31-109)||(20675356-20675433)
chr5 (31-111)||(20680102-20680181)
chr5 (47-108)||(8460293-8460354)
chr5 (31-108)||(20671134-20671210)
chr5 (47-108)||(27073814-27073875)
chr5 (33-108)||(15212795-15212869)
chr5 (51-108)||(19049640-19049697)
chr5 (47-112)||(20679881-20679940)
chr5 (33-112)||(40933319-40933399)
chr5 (33-99)||(40936714-40936779)
chr5 (51-108)||(37256953-37257011)
[»] chr4 (13 HSPs)
chr4 (33-108)||(27789164-27789238)
chr4 (31-110)||(28924652-28924730)
chr4 (31-99)||(12327939-12328007)
chr4 (32-108)||(30953279-30953354)
chr4 (31-112)||(22751832-22751911)
chr4 (47-109)||(7202731-7202793)
chr4 (47-112)||(20494702-20494768)
chr4 (50-108)||(28926768-28926826)
chr4 (31-108)||(22763110-22763185)
chr4 (33-108)||(23882472-23882546)
chr4 (47-108)||(20503323-20503385)
chr4 (54-99)||(12324759-12324804)
chr4 (63-142)||(23878854-23878943)
[»] scaffold0716 (1 HSPs)
scaffold0716 (50-112)||(2258-2320)
[»] scaffold0064 (1 HSPs)
scaffold0064 (47-108)||(25704-25765)
[»] scaffold0076 (2 HSPs)
scaffold0076 (32-112)||(36985-37064)
scaffold0076 (75-108)||(49913-49946)
[»] scaffold0320 (1 HSPs)
scaffold0320 (33-108)||(12138-12212)
[»] scaffold0179 (2 HSPs)
scaffold0179 (33-112)||(24949-25027)
scaffold0179 (33-109)||(27608-27683)
[»] scaffold0167 (1 HSPs)
scaffold0167 (33-108)||(10398-10472)
[»] chr1 (9 HSPs)
chr1 (50-141)||(20442638-20442739)
chr1 (50-108)||(12020169-12020227)
chr1 (51-141)||(24280843-24280944)
chr1 (50-115)||(20514499-20514564)
chr1 (51-112)||(33295706-33295767)
chr1 (55-108)||(18433322-18433375)
chr1 (50-112)||(19749646-19749709)
chr1 (51-99)||(15142606-15142653)
chr1 (63-112)||(15158017-15158067)
[»] scaffold0888 (1 HSPs)
scaffold0888 (50-112)||(4198-4260)
[»] scaffold0013 (3 HSPs)
scaffold0013 (50-112)||(135724-135786)
scaffold0013 (31-108)||(133405-133480)
scaffold0013 (31-108)||(137934-138009)
[»] scaffold0018 (1 HSPs)
scaffold0018 (33-112)||(194710-194788)
[»] scaffold0009 (1 HSPs)
scaffold0009 (48-108)||(96200-96260)
[»] scaffold0369 (1 HSPs)
scaffold0369 (33-98)||(7667-7730)
[»] scaffold0264 (1 HSPs)
scaffold0264 (47-112)||(12945-13011)
[»] scaffold0878 (1 HSPs)
scaffold0878 (47-98)||(4371-4421)
[»] scaffold0208 (1 HSPs)
scaffold0208 (47-112)||(1451-1517)
[»] scaffold0071 (1 HSPs)
scaffold0071 (47-112)||(44319-44384)
[»] scaffold0045 (1 HSPs)
scaffold0045 (50-112)||(78807-78870)
[»] scaffold0139 (1 HSPs)
scaffold0139 (63-98)||(2856-2891)
[»] scaffold0438 (1 HSPs)
scaffold0438 (47-95)||(3849-3897)
[»] scaffold0023 (1 HSPs)
scaffold0023 (53-108)||(150019-150074)


Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 14 - 355
Target Start/End: Original strand, 26382216 - 26382556
Alignment:
Q  14 tactctcgagatcattcgcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagttgt 113  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  26382216 tactctcgagatcattcacatccaataatcaattctaaaaccctagaatacgatgcttaatcctagaatctcttattgtactttttgcaagtacagttgt 26382315  T
Q  114 gggaaaaggtaaaactaacctagaccacaactcaaaaccctaattttgtgaatcgtaatcgaacatcacgattcggaaacagccactgttttactgcgat 213  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  26382316 gggaaaaggtaaaactaacctagaccacatctcaaaaccctaattttgtgaatcgtaatcgaacatcactattcggaaacagccactgtttcactgcgat 26382415  T
Q  214 gtccaaccaaactgatcacggtaggcgtggaggtcgtccactcatcgccttctttcgccaccatagttttcaccatgcctcctttcaaccatcatgagat 313  Q
     ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  26382416 atccaaccaaactgatcacggtaggcgt-gaggtcgtccactcatcgccttctttcaccaccatagttttcaccacgcctcctttcaaccatcatgagat 26382514  T
Q  314 cgttcctgcacggttgtttggtctgatcgttcagaaaaagct 355  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  26382515 cgttcctgcatggttgtttggtctggtcgttcagaaaaagct 26382556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 26384057 - 26384134
Alignment:
Q  31 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 108  Q
    |||| ||||| ||| |||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||    
T  26384057 gcatacaatattcagttctaaaaccctagaatatgattcttaaccctagaatcccctattgtactttttgcaagtaca 26384134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 23692860 - 23692964
Alignment:
Q  47 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtacagt----------tgtgggaaaaggtaaaactaaccta 135  Q
    ||||| ||||||  ||||||||||||| |||||||| |||| |||||||||| ||||||||||||          |||||||||||||||||||||||||    
T  23692860 tctaataccctattatacgattcttaaccctagaat-ccttgttgtacttttctgcaagtacagttggcgccgtctgtgggaaaaggtaaaactaaccta 23692958  T
Q  136 gaccac 141  Q
    ||||||    
T  23692959 gaccac 23692964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 2218595 - 2218520
Alignment:
Q  31 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 108  Q
    |||||||||||||||| ||||  ||||||||||||||  |||| ||||| |||||||||| | |||||||||||||||    
T  2218595 gcatccaataatcaat-ctaat-ccctagaatacgatatttaaccctagtatcccttattatgctttttgcaagtaca 2218520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 1041431 - 1041356
Alignment:
Q  32 catccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 108  Q
    ||||||||||||||| ||||||||||| |||||||| || || | ||| ||||||||||||  |||||||| |||||    
T  1041431 catccaataatcaat-ctaaaaccctaaaatacgatactgaaccttagtatcccttattgtgttttttgcaggtaca 1041356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 4876911 - 4876972
Alignment:
Q  47 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtaca 108  Q
    ||||||||||||| ||||||||||||| |||| ||| | ||||||||||||| ||||||||||    
T  4876911 tctaaaaccctagtatacgattcttaaccctaaaat-ctttattgtacttttatgcaagtaca 4876972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 110
Target Start/End: Original strand, 23696647 - 23696710
Alignment:
Q  47 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtacagt 110  Q
    ||||| ||||||  ||||||||||||| |||||||| |||| |||||||||| ||||||||||||    
T  23696647 tctaagaccctaatatacgattcttaaccctagaat-ccttgttgtacttttctgcaagtacagt 23696710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 153; Significance: 5e-81; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 111 - 355
Target Start/End: Original strand, 14366334 - 14366578
Alignment:
Q  111 tgtgggaaaaggtaaaactaacctagaccacaactcaaaaccctaattttgtgaatcgtaatcgaacatcacgattcggaaacagccactgttttactgc 210  Q
    |||||||||||||||||||||||||||||||| |||||||||| | ||   ||||||||||||||||||||||||||| ||||||||||||||| || ||    
T  14366334 tgtgggaaaaggtaaaactaacctagaccacatctcaaaaccccatttggctgaatcgtaatcgaacatcacgattcgaaaacagccactgtttcacagc 14366433  T
Q  211 gatgtccaaccaaactgatcacggtaggcgtggaggtcgtccactcatcgccttctttcgccaccatagttttcaccatgcctcctttcaaccatcatga 310  Q
     || ||||| || ||||| ||||||||| |||||||||||  |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |    
T  14366434 aatatccaatcatactgaacacggtaggtgtggaggtcgttgactcatcgccttctttcgccgccatagttttcaccacgcctcctttcaaccatcataa 14366533  T
Q  311 gatcgttcctgcacggttgtttggtctgatcgttcagaaaaagct 355  Q
    |||||||||||||||| ||||||||| | ||||||||||||||||    
T  14366534 gatcgttcctgcacggctgtttggtccggtcgttcagaaaaagct 14366578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 31 - 142
Target Start/End: Original strand, 17007898 - 17008018
Alignment:
Q  31 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagt----------tgtgggaaaa 120  Q
    |||||||||||||| | |||||||||||  || |||||||||| ||||||||||||||||||||||||||||||||||||          |||||||||     
T  17007898 gcatccaataatcagt-ctaaaaccctaatatccgattcttaaccctagaatcccttattgtactttttgcaagtacagttggggccgtctgtgggaaac 17007996  T
Q  121 ggtaaaactaacctagaccaca 142  Q
    ||||||||||||||||||||||    
T  17007997 ggtaaaactaacctagaccaca 17008018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 31 - 142
Target Start/End: Complemental strand, 17541052 - 17540932
Alignment:
Q  31 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagt----------tgtgggaaaa 120  Q
    |||||||||||||| | |||||||||||  || |||||||||| ||||||||||||||||||||||||||||||||||||          |||||||||     
T  17541052 gcatccaataatcagt-ctaaaaccctaatatccgattcttaaccctagaatcccttattgtactttttgcaagtacagttggggccgtctgtgggaaac 17540954  T
Q  121 ggtaaaactaacctagaccaca 142  Q
    ||||||||||||||||||||||    
T  17540953 ggtaaaactaacctagaccaca 17540932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 37718233 - 37718294
Alignment:
Q  47 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 108  Q
    ||||||||| ||| ||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  37718233 tctaaaaccttagtatacgattcttaaccctagaatcccctattgtactttttgcaagtaca 37718294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 2370 - 2308
Alignment:
Q  50 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagttg 112  Q
    |||||||||  ||||||||||||| ||||||||| | ||||||||||||||||||||||||||    
T  2370 aaaaccctaatatacgattcttaaccctagaatcacctattgtactttttgcaagtacagttg 2308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 32231516 - 32231440
Alignment:
Q  31 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 108  Q
    |||||||||| ||||| |||||||||||  ||||||||||||| ||||||||| | |||||||||||||| |||||||    
T  32231516 gcatccaatagtcaat-ctaaaaccctaatatacgattcttaaccctagaatcacctattgtactttttggaagtaca 32231440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 753459 - 753517
Alignment:
Q  50 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 108  Q
    |||||||||  ||||||||||||| ||||||||| | ||||||||||||||||||||||    
T  753459 aaaaccctaatatacgattcttaaccctagaatcacctattgtactttttgcaagtaca 753517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 31709031 - 31709096
Alignment:
Q  47 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtacagttg 112  Q
    ||||||||||||| ||||||||||||| |||||||| | ||||||||||||| ||||||||||||||    
T  31709031 tctaaaaccctagtatacgattcttaaccctagaat-ctttattgtacttttatgcaagtacagttg 31709096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 141
Target Start/End: Complemental strand, 16083515 - 16083415
Alignment:
Q  51 aaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagt----------tgtgggaaaaggtaaaactaacctagacca 140  Q
    ||||||||||||||||| ||||| ||||  |||||||||||| |||||| |||||| |||          ||||||||||||||||||||||||||||||    
T  16083515 aaaccctagaatacgatacttaaccctaatatcccttattgtgcttttttcaagtatagttggcgccgtctgtgggaaaaggtaaaactaacctagacca 16083416  T
Q  141 c 141  Q
    |    
T  16083415 c 16083415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 141
Target Start/End: Complemental strand, 16084922 - 16084822
Alignment:
Q  51 aaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagt----------tgtgggaaaaggtaaaactaacctagacca 140  Q
    ||||||||||||||||| ||||| ||||  |||||||||||| |||||| |||||| |||          ||||||||||||||||||||||||||||||    
T  16084922 aaaccctagaatacgatacttaaccctaatatcccttattgtgcttttttcaagtatagttggcgccgtctgtgggaaaaggtaaaactaacctagacca 16084823  T
Q  141 c 141  Q
    |    
T  16084822 c 16084822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 141
Target Start/End: Complemental strand, 16086329 - 16086229
Alignment:
Q  51 aaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagt----------tgtgggaaaaggtaaaactaacctagacca 140  Q
    ||||||||||||||||| ||||| ||||  |||||||||||| |||||| |||||| |||          ||||||||||||||||||||||||||||||    
T  16086329 aaaccctagaatacgatacttaaccctaatatcccttattgtgcttttttcaagtatagttggcgccgtctgtgggaaaaggtaaaactaacctagacca 16086230  T
Q  141 c 141  Q
    |    
T  16086229 c 16086229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 141
Target Start/End: Complemental strand, 16087736 - 16087636
Alignment:
Q  51 aaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagt----------tgtgggaaaaggtaaaactaacctagacca 140  Q
    ||||||||||||||||| ||||| ||||  |||||||||||| |||||| |||||| |||          ||||||||||||||||||||||||||||||    
T  16087736 aaaccctagaatacgatacttaaccctaatatcccttattgtgcttttttcaagtatagttggcgccgtctgtgggaaaaggtaaaactaacctagacca 16087637  T
Q  141 c 141  Q
    |    
T  16087636 c 16087636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 20134938 - 20134875
Alignment:
Q  50 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttt--tgcaagtacagttg 112  Q
    |||||||||| ||||||||||||| |||||||| |||||||||||||||  ||||||||||||||    
T  20134938 aaaaccctagtatacgattcttaaccctagaat-ccttattgtactttttatgcaagtacagttg 20134875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 17526633 - 17526559
Alignment:
Q  31 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagta 106  Q
    |||||||||||||| | |||||| ||||  ||  ||||||||| |||||||||||||||||||| |||||||||||    
T  17526633 gcatccaataatcagt-ctaaaatcctaatatctgattcttaaccctagaatcccttattgtacattttgcaagta 17526559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 16077808 - 16077750
Alignment:
Q  51 aaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacag 109  Q
    ||||||||||||||||| ||||| ||||| | |||||||||| |||||| |||||||||    
T  16077808 aaaccctagaatacgatacttaaccctagtaccccttattgtgcttttttcaagtacag 16077750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 21945924 - 21945979
Alignment:
Q  53 accctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtaca 108  Q
    ||||||| ||||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  21945924 accctagtatacgattcttaaccctagaat-ccttattgtacttttctgcaagtaca 21945979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 20131809 - 20131752
Alignment:
Q  54 ccctagaatacgattcttaatcctagaatcccttattgtactttt--tgcaagtacagt 110  Q
    |||||| ||||||||||||| |||||||| |||||||||||||||  ||||||||||||    
T  20131809 ccctagtatacgattcttaaccctagaat-ccttattgtactttttatgcaagtacagt 20131752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 31711251 - 31711312
Alignment:
Q  47 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtaca 108  Q
    ||||||||||||| ||||||||||||| |||| ||| | ||||||||||||| ||||||||||    
T  31711251 tctaaaaccctagtatacgattcttaaccctaaaat-ctttattgtacttttatgcaagtaca 31711312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 21408489 - 21408552
Alignment:
Q  50 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttt--tgcaagtacagttg 112  Q
    |||||||||  | ||||||||||| |||||||| |||||||||||||||  ||||||||||||||    
T  21408489 aaaaccctaatagacgattcttaaccctagaat-ccttattgtactttttctgcaagtacagttg 21408552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 21802981 - 21803044
Alignment:
Q  50 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttt--tgcaagtacagttg 112  Q
    |||||||||  | ||||||||||| |||||||| |||||||||||||||  ||||||||||||||    
T  21802981 aaaaccctaatagacgattcttaaccctagaat-ccttattgtactttttctgcaagtacagttg 21803044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 153; Significance: 5e-81; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 111 - 355
Target Start/End: Complemental strand, 8856891 - 8856647
Alignment:
Q  111 tgtgggaaaaggtaaaactaacctagaccacaactcaaaaccctaattttgtgaatcgtaatcgaacatcacgattcggaaacagccactgttttactgc 210  Q
    |||||||||||||||||||||||||||||||| |||||||||| | |||  ||||||||||||||||||||||||||||||||| ||||||||| || ||    
T  8856891 tgtgggaaaaggtaaaactaacctagaccacatctcaaaaccccattttgctgaatcgtaatcgaacatcacgattcggaaacatccactgtttcacagc 8856792  T
Q  211 gatgtccaaccaaactgatcacggtaggcgtggaggtcgtccactcatcgccttctttcgccaccatagttttcaccatgcctcctttcaaccatcatga 310  Q
     || ||||| || ||||||||||||||| |||||||||||| |||||||||||||||||||  |||||||||| |||| ||||||||||||||||||| |    
T  8856791 aatatccaatcatactgatcacggtaggtgtggaggtcgtcgactcatcgccttctttcgcagccatagtttttaccacgcctcctttcaaccatcataa 8856692  T
Q  311 gatcgttcctgcacggttgtttggtctgatcgttcagaaaaagct 355  Q
    |||| || |||||||||||||||||| | ||||||||||||||||    
T  8856691 gatcttttctgcacggttgtttggtccggtcgttcagaaaaagct 8856647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 17593793 - 17593910
Alignment:
Q  33 atccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttt--tgcaagtacagt----------tgtgggaaaa 120  Q
    |||||||||||| | |||||||||||  ||||||||||||| ||||||||||||||||||||||||  ||||||||||||          ||||||||||    
T  17593793 atccaataatcagt-ctaaaaccctaatatacgattcttaaccctagaatcccttattgtactttttctgcaagtacagttggcgccgtctgtgggaaaa 17593891  T
Q  121 ggtaaaactaacctagacc 139  Q
    |||||||||||||||||||    
T  17593892 ggtaaaactaacctagacc 17593910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 8368257 - 8368195
Alignment:
Q  47 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacag 109  Q
    ||||||| ||||  ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8368257 tctaaaatcctaatatacgattcttaaacctagaatcccttattgtactttttgcaagtacag 8368195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 54110948 - 54111002
Alignment:
Q  52 aaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagta 106  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  54110948 aaccctagtatacgattcttaaccctagaatcccttattgtactttttgcaagta 54111002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 12206697 - 12206640
Alignment:
Q  51 aaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 108  Q
    ||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12206697 aaaccctaatatacgattcttaaccctagaatcccttattgtactttttgcaagtaca 12206640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 15926721 - 15926660
Alignment:
Q  50 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagttg 112  Q
    |||||||||| ||||||||||||| |||||||| |||||||||||||||| ||||||||||||    
T  15926721 aaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttttcaagtacagttg 15926660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 17601801 - 17601866
Alignment:
Q  33 atccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtacttttt 99  Q
    |||||||||||| | |||||||||||  ||||||||||||| |||||||||||||||||||||||||    
T  17601801 atccaataatcagt-ctaaaaccctaatatacgattcttaaccctagaatcccttattgtacttttt 17601866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 12209109 - 12209048
Alignment:
Q  51 aaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagttg 112  Q
    ||||||||  ||||||||| ||| |||||||||||||||||||||||||||||||| |||||    
T  12209109 aaaccctaatatacgattcctaaccctagaatcccttattgtactttttgcaagtatagttg 12209048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 14433434 - 14433491
Alignment:
Q  51 aaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 108  Q
    |||||||||  |||||||||||||||||||||||| |||||| |||||||||||||||    
T  14433434 aaaccctagtttacgattcttaatcctagaatcccgtattgtgctttttgcaagtaca 14433491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 14566259 - 14566198
Alignment:
Q  51 aaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagttg 112  Q
    ||||||||| ||| ||||||||  ||||||||| ||||||||||||||||||||||||||||    
T  14566259 aaaccctagtatatgattcttagccctagaatctcttattgtactttttgcaagtacagttg 14566198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 16082800 - 16082863
Alignment:
Q  50 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttt--tgcaagtacagttg 112  Q
    |||||||||| ||||||||||||| |||||||| |||||||||||||||  ||||||||||||||    
T  16082800 aaaaccctagtatacgattcttaaccctagaat-ccttattgtactttttatgcaagtacagttg 16082863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 103405 - 103343
Alignment:
Q  50 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtacagttg 112  Q
    |||||||||  ||||||||||||| |||||||| ||||||||||||||| ||||||||||||||    
T  103405 aaaaccctaatatacgattcttaaccctagaat-ccttattgtacttttatgcaagtacagttg 103343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 19767679 - 19767616
Alignment:
Q  47 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtacag 109  Q
    ||||||||||||  ||| ||||||||| |||| ||||||||||||||||||| |||||||||||    
T  19767679 tctaaaaccctaagatatgattcttaaccctataatcccttattgtacttttctgcaagtacag 19767616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 15417854 - 15417919
Alignment:
Q  47 tctaaaaccctagaatacgattcttaatcctagaatcccttattgta-ctttttgcaagtacagttg 112  Q
    ||||||||||||  ||||||||||||| |||||||| |||||||||| |||| ||||||||||||||    
T  15417854 tctaaaaccctaatatacgattcttaaccctagaat-ccttattgtacctttctgcaagtacagttg 15417919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 10807665 - 10807612
Alignment:
Q  51 aaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaag 104  Q
    ||||||||||||||||| ||||| ||||| |||| ||||||| |||||||||||    
T  10807665 aaaccctagaatacgatacttaaacctagtatcctttattgtgctttttgcaag 10807612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 10811788 - 10811739
Alignment:
Q  51 aaaccctagaatacgattcttaatcctagaatcccttattgtactttttg 100  Q
    ||||||||||||||||| ||||||||||| |||||| ||||| |||||||    
T  10811788 aaaccctagaatacgatacttaatcctagtatccctgattgtgctttttg 10811739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 14429949 - 14430009
Alignment:
Q  51 aaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagttg 112  Q
    |||||||||  |||||||||||||| |||||||| ||||||| | |||||||||||||||||    
T  14429949 aaaccctagtttacgattcttaatcttagaatcctttattgtgc-ttttgcaagtacagttg 14430009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 14561075 - 14561015
Alignment:
Q  51 aaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagtt 111  Q
    ||||||||| ||| ||||||||  |||| |||| ||||||||| |||||||||||||||||    
T  14561075 aaaccctagtatatgattcttagccctaaaatctcttattgtattttttgcaagtacagtt 14561015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 18556787 - 18556838
Alignment:
Q  63 acgattcttaatcctagaatcccttattgtactttt--tgcaagtacagttg 112  Q
    ||||||||||| |||||||||| |||||||||||||  ||||||||||||||    
T  18556787 acgattcttaaccctagaatcctttattgtactttttctgcaagtacagttg 18556838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 94543 - 94485
Alignment:
Q  50 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtaca 108  Q
    |||||||||  ||||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  94543 aaaaccctaatatacgattcttaaccctagaat-ccttattgtacttttatgcaagtaca 94485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 111 - 142
Target Start/End: Complemental strand, 26907135 - 26907104
Alignment:
Q  111 tgtgggaaaaggtaaaactaacctagaccaca 142  Q
    ||||||||||||||||||||||||||||||||    
T  26907135 tgtgggaaaaggtaaaactaacctagaccaca 26907104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 16091976 - 16092024
Alignment:
Q  50 aaaaccctagaatacgattcttaatcctagaatcccttattgtacttttt 99  Q
    |||||||||| ||||||||||||| ||||||||  |||||||||||||||    
T  16091976 aaaaccctagtatacgattcttaaccctagaat-tcttattgtacttttt 16092024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 26996802 - 26996737
Alignment:
Q  120 aggtaaaactaacctagaccacaactcaaaaccctaattttgtgaatcgtaatcgaacatcacgat 185  Q
    |||||||||||| ||| |||||| |||||||||||  | || ||||||||||||  ||||||||||    
T  26996802 aggtaaaactaaactacaccacatctcaaaaccctgttattatgaatcgtaatccgacatcacgat 26996737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 136; Significance: 8e-71; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 50 - 355
Target Start/End: Complemental strand, 19577283 - 19576967
Alignment:
Q  50 aaaaccctagaatacgattcttaatcctagaatcccttattgtacttttt--gcaagtacagttg----------tgggaaaaggtaaaactaacctaga 137  Q
    |||||||||| ||||||||||||| |||||||||  ||||||||||||||  |||||||||||||          |||| || |||||||||||||||||    
T  19577283 aaaaccctagtatacgattcttaaccctagaatct-ttattgtactttttctgcaagtacagttggcgccgtctgtgggtaatggtaaaactaacctaga 19577185  T
Q  138 ccacaactcaaaaccctaattttgtgaatcgtaatcgaacatcacgattcggaaacagccactgttttactgcgatgtccaaccaaactgatcacggtag 237  Q
    ||||| |||||||||| | ||   ||||||||||||||||||||||||||  ||||||||||||||| || || || ||||| || ||||| ||||||||    
T  19577184 ccacatctcaaaaccccatttggctgaatcgtaatcgaacatcacgattcaaaaacagccactgtttcacagcaatatccaatcatactgaacacggtag 19577085  T
Q  238 gcgtggaggtcgtccactcatcgccttctttcgccaccatagttttcaccatgcctcctttcaaccatcatgagatcgttcctgcacggttgtttggtct 337  Q
    | |||||||| ||  ||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| |||||||||     
T  19577084 gtgtggaggtggttgactcatcaccttctttcgccgccatagttttcaccacgcctcctttcaaccatcataagatctttcctgcacggctgtttggtcc 19576985  T
Q  338 gatcgttcagaaaaagct 355  Q
    | ||||||||||||||||    
T  19576984 ggtcgttcagaaaaagct 19576967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 19011661 - 19011603
Alignment:
Q  50 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtaca 108  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  19011661 aaaaccctagaatacgattcttaaccctagaat-ccttattgtacttttatgcaagtaca 19011603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 19573663 - 19573615
Alignment:
Q  50 aaaaccctagaatacgattcttaatcctagaatcccttattgtacttttt 99  Q
    |||||||||| ||||||||||||| |||||||| ||||||||||||||||    
T  19573663 aaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttt 19573615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 142
Target Start/End: Original strand, 11231437 - 11231540
Alignment:
Q  50 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttt--tgcaagtacagt----------tgtgggaaaaggtaaaactaacctaga 137  Q
    |||||||||| ||||||||||||| |||| ||| | |||||||||||||  ||||||||||||          ||||||||||||||||| |||||||||    
T  11231437 aaaaccctagtatacgattcttaaccctaaaat-ctttattgtactttttatgcaagtacagttggcgtcgtctgtgggaaaaggtaaaattaacctaga 11231535  T
Q  138 ccaca 142  Q
    |||||    
T  11231536 ccaca 11231540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 23607018 - 23606970
Alignment:
Q  50 aaaaccctagaatacgattcttaatcctagaatcccttattgtacttttt 99  Q
    |||||||||| ||||||||||||| |||||||| ||||| ||||||||||    
T  23607018 aaaaccctagcatacgattcttaaccctagaat-ccttactgtacttttt 23606970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 20090477 - 20090426
Alignment:
Q  47 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtacttttt 99  Q
    ||||||||||| | |||||||||| || |||||||| ||||||||||||||||    
T  20090477 tctaaaaccctcgcatacgattctcaaccctagaat-ccttattgtacttttt 20090426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 11734975 - 11735051
Alignment:
Q  31 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 108  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||    
T  11734975 gcatccaataatcagttctaaaaccctagaatacgattcttaaccctagaatcccttattgtgcttttt-caagtaca 11735051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 6198780 - 6198845
Alignment:
Q  47 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagttg 112  Q
    ||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6198780 tctaaaaccctaatatacgattcttaatcttagaatcccttattgtactttttgcaagtacagttg 6198845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 18016965 - 18017041
Alignment:
Q  31 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 108  Q
    |||||||||||||| | ||||||| || | |||| |||||||| ||||||||||||||||||||||||||||||||||    
T  18016965 gcatccaataatcagt-ctaaaactctggtatacaattcttaaccctagaatcccttattgtactttttgcaagtaca 18017041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 15932302 - 15932224
Alignment:
Q  33 atccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagttg 112  Q
    |||||||||||| | |||||||||||  ||||||||||||| |||||||||| ||| ||| |||||||||||||||||||    
T  15932302 atccaataatcagt-ctaaaaccctaatatacgattcttaaccctagaatcctttactgtgctttttgcaagtacagttg 15932224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 30096798 - 30096859
Alignment:
Q  47 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 108  Q
    ||||||||||||  ||||||||||||| ||||||||| ||||| ||||||||||||||||||    
T  30096798 tctaaaaccctaatatacgattcttaaccctagaatctcttatcgtactttttgcaagtaca 30096859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 6202041 - 6202115
Alignment:
Q  33 atccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 108  Q
    |||||||||||| | |||||||||||  ||||||||| ||| |||| |||| ||||||||||||||||||||||||    
T  6202041 atccaataatcagt-ctaaaaccctaatatacgattcataaccctataatctcttattgtactttttgcaagtaca 6202115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 9070427 - 9070502
Alignment:
Q  31 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 108  Q
    ||||||||||||||||    ||||||||||||||||| |||| || ||| |||||||||||| |||||||||||||||    
T  9070427 gcatccaataatcaatat--aaaccctagaatacgatacttagtcatagtatcccttattgtgctttttgcaagtaca 9070502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 9214588 - 9214531
Alignment:
Q  51 aaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 108  Q
    |||||||||  |||||||||||| ||||||||| |||||||| |||||||||||||||    
T  9214588 aaaccctagtttacgattcttaaccctagaatctcttattgtgctttttgcaagtaca 9214531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 44357133 - 44357196
Alignment:
Q  50 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttt--tgcaagtacagttg 112  Q
    |||||||||| ||||||||||||| |||||||| |||||||||||||||  ||||||||||||||    
T  44357133 aaaaccctagtatacgattcttaaccctagaat-ccttattgtactttttatgcaagtacagttg 44357196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 142
Target Start/End: Original strand, 9066472 - 9066591
Alignment:
Q  31 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagtt----------gtgggaaaa 120  Q
    |||||||||||||||| ||||| |||||||||||||| ||||  ||| | || |||| |||| ||||||||||||||||||          ||||||||     
T  9066472 gcatccaataatcaat-ctaaa-ccctagaatacgatacttagccctggtattccttgttgtgctttttgcaagtacagttggcgcagtccgtgggaaac 9066569  T
Q  121 ggtaaaactaacctagaccaca 142  Q
    ||||||||||||||||||||||    
T  9066570 ggtaaaactaacctagaccaca 9066591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 11544858 - 11544919
Alignment:
Q  47 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtaca 108  Q
    ||||||| ||||| ||||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  11544858 tctaaaatcctagtatacgattcttaaccctagaat-ccttattgtacttttgtgcaagtaca 11544919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 43173426 - 43173367
Alignment:
Q  51 aaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagt 110  Q
    ||||||||||||||||| ||||| | ||  |||||||||||| |||||||| ||||||||    
T  43173426 aaaccctagaatacgatacttaaccataatatcccttattgtgctttttgctagtacagt 43173367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 44360259 - 44360316
Alignment:
Q  54 ccctagaatacgattcttaatcctagaatcccttattgtactttt--tgcaagtacagt 110  Q
    |||||| ||||||||||||| |||||||| |||||||||||||||  ||||||||||||    
T  44360259 ccctagtatacgattcttaaccctagaat-ccttattgtactttttatgcaagtacagt 44360316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 11527453 - 11527514
Alignment:
Q  47 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtaca 108  Q
    ||||||||||||| |||||||||||||  ||| ||| ||||||||||||||| ||||||||||    
T  11527453 tctaaaaccctagtatacgattcttaacactataat-ccttattgtacttttgtgcaagtaca 11527514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 23532499 - 23532450
Alignment:
Q  63 acgattcttaatcctagaatcccttattgtactttt-tgcaagtacagttg 112  Q
    ||||||||||| |||||||| ||||||||||||||| ||||||||||||||    
T  23532499 acgattcttaaccctagaat-ccttattgtacttttctgcaagtacagttg 23532450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 20675746 - 20675683
Alignment:
Q  49 taaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagttg 112  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20675746 taaaaccctagtatacgattcttaaccctagaatcccttattgtactttttgcaagtacagttg 20675683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 20675433 - 20675356
Alignment:
Q  31 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacag 109  Q
    |||||||||||| ||  |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  20675433 gcatccaataat-aagactaaaaccctagtatacgattcttaaccctagaatcccttattgtactttttgcaagtacag 20675356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 20680181 - 20680102
Alignment:
Q  31 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagtt 111  Q
    |||||||||||||| | |||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||| |||||    
T  20680181 gcatccaataatcagt-ctaaaaccctagtatacgattcttaaccctagaatcccttattgtactttttgctagtgcagtt 20680102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 8460293 - 8460354
Alignment:
Q  47 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 108  Q
    ||||||||||||  ||||||||||||| |||||||| |||||||||||||||||||||||||    
T  8460293 tctaaaaccctaatatacgattcttaaccctagaataccttattgtactttttgcaagtaca 8460354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 20671210 - 20671134
Alignment:
Q  31 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 108  Q
    |||||||||||||| | |||| ||||||| ||||||||||||| | |||||||| |||||||||||||||||||||||    
T  20671210 gcatccaataatcagt-ctaagaccctagtatacgattcttaaccttagaatccattattgtactttttgcaagtaca 20671134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 27073814 - 27073875
Alignment:
Q  47 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 108  Q
    ||||||| ||||| |||||||| |||| | ||||||||||||||||||||||||||||||||    
T  27073814 tctaaaaacctagtatacgatttttaaccttagaatcccttattgtactttttgcaagtaca 27073875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 15212869 - 15212795
Alignment:
Q  33 atccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 108  Q
    |||||||||||||| |||  ||||||  | ||||||||| | ||||||||||||||||||||||||||||||||||    
T  15212869 atccaataatcaat-ctactaccctaatacacgattctttaccctagaatcccttattgtactttttgcaagtaca 15212795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 19049697 - 19049640
Alignment:
Q  51 aaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 108  Q
    ||||||||||||||||| ||||  ||||| |||||||||||| |||||||||||||||    
T  19049697 aaaccctagaatacgatacttagccctagtatcccttattgtgctttttgcaagtaca 19049640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 20679940 - 20679881
Alignment:
Q  47 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagttg 112  Q
    ||||||||||||| ||||||||||||| ||      ||||||||||||||||||||||||||||||    
T  20679940 tctaaaaccctagtatacgattcttaaccc------cccttattgtactttttgcaagtacagttg 20679881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 40933319 - 40933399
Alignment:
Q  33 atccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttt--tgcaagtacagttg 112  Q
    |||||||||||| | |||||||||||  |||| |||||||| |||| ||| |||||||||||||||  ||||||||||||||    
T  40933319 atccaataatcagt-ctaaaaccctaacatactattcttaaccctataattccttattgtactttttctgcaagtacagttg 40933399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 40936714 - 40936779
Alignment:
Q  33 atccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtacttttt 99  Q
    |||||||||||| | |||||||||||  |||| |||||||| |||| ||||||||||||||||||||    
T  40936714 atccaataatcagt-ctaaaaccctaatatactattcttaaccctataatcccttattgtacttttt 40936779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 37257011 - 37256953
Alignment:
Q  51 aaaccctagaatacgattcttaatcc-tagaatcccttattgtactttttgcaagtaca 108  Q
    ||||||||  ||||||||||||| || ||||||| | ||||||||||||||||||||||    
T  37257011 aaaccctaatatacgattcttaacccctagaatcacctattgtactttttgcaagtaca 37256953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 27789164 - 27789238
Alignment:
Q  33 atccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 108  Q
    |||||||||||| | |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27789164 atccaataatcagt-ctaaaaccctagtatacgattcttaaccctagaatcccttattgtactttttgcaagtaca 27789238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 28924730 - 28924652
Alignment:
Q  31 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagt 110  Q
    |||||||||||||| | |||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||    
T  28924730 gcatccaataatcagt-ctaaaaccctagtatacgattcttaaccccagaatcccttattgtactttttgcaagtacagt 28924652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 12327939 - 12328007
Alignment:
Q  31 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtacttttt 99  Q
    |||| ||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  12327939 gcattcaataatcagttatgaaaccctagaatacgattcttaatcctagaatcccttattgtacttttt 12328007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 30953279 - 30953354
Alignment:
Q  32 catccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 108  Q
    ||||||||||||| |  ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30953279 catccaataatcagta-taaaaccctagtatacgattcttaaccctagaatcccttattgtactttttgcaagtaca 30953354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 22751832 - 22751911
Alignment:
Q  31 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagttg 112  Q
    |||||||||||| || ||||||||||||| ||||||||||||| |||||||| |||||||||||||||| ||||||||||||    
T  22751832 gcatccaataat-aagtctaaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttttcaagtacagttg 22751911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 7202793 - 7202731
Alignment:
Q  47 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacag 109  Q
    ||||||||||||  ||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  7202793 tctaaaaccctaatatacgattcttaaccctagaatcccttattgtgctttttgcaagtacag 7202731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 20494702 - 20494768
Alignment:
Q  47 tctaaaaccctagaatacgattcttaatcc-tagaatcccttattgtactttttgcaagtacagttg 112  Q
    ||||||||||||  ||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  20494702 tctaaaaccctaatatacgattcttaaaccctagaatcccttattgtactttttgcaagtacagttg 20494768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 28926826 - 28926768
Alignment:
Q  50 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 108  Q
    |||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  28926826 aaaaccctagtatacgattcttaatcatagaatcccttattgaactttttgcaagtaca 28926768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 22763110 - 22763185
Alignment:
Q  31 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 108  Q
    |||||||||||||| | |||||| ||||| ||||||||||||| |||||||| |||||||||||||||| ||||||||    
T  22763110 gcatccaataatcagt-ctaaaatcctagtatacgattcttaaccctagaat-ccttattgtacttttttcaagtaca 22763185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 23882472 - 23882546
Alignment:
Q  33 atccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 108  Q
    |||||||| ||||| |||||||||||  ||||||||||||| ||||||||| |||||||| |||||||||| ||||    
T  23882472 atccaatagtcaat-ctaaaaccctaatatacgattcttaaccctagaatctcttattgtgctttttgcaaataca 23882546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 20503323 - 20503385
Alignment:
Q  47 tctaaaaccctagaatacgattcttaatcct-agaatcccttattgtactttttgcaagtaca 108  Q
    ||||||||||||  |||||||| |||| ||| |||||||||||||||||||||||||||||||    
T  20503323 tctaaaaccctaatatacgattattaaaccttagaatcccttattgtactttttgcaagtaca 20503385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 12324759 - 12324804
Alignment:
Q  54 ccctagaatacgattcttaatcctagaatcccttattgtacttttt 99  Q
    ||||||||||| |||||||| |||||||||||||| ||||||||||    
T  12324759 ccctagaatacaattcttaaccctagaatcccttactgtacttttt 12324804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 142
Target Start/End: Original strand, 23878854 - 23878943
Alignment:
Q  63 acgattcttaatcctagaatcccttattgtactttttgcaagtacagt----------tgtgggaaaaggtaaaactaacctagaccaca 142  Q
    |||||||||||  |||||||| |||||||| |||||||||||||| ||          ||||||||| ||||||||||||||||||||||    
T  23878854 acgattcttaacactagaatctcttattgtgctttttgcaagtaccgttggcaccgtctgtgggaaacggtaaaactaacctagaccaca 23878943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0716 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0716
Description:

Target: scaffold0716; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 2258 - 2320
Alignment:
Q  50 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagttg 112  Q
    |||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2258 aaaaccctaatatacgattcttaaccctagaatcccttattgtactttttgcaagtacagttg 2320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 25765 - 25704
Alignment:
Q  47 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 108  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  25765 tctaaaaccctagtatacgattcttaaccctagaatcacttattgtactttttgcaagtaca 25704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 36985 - 37064
Alignment:
Q  32 catccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagttg 112  Q
    ||||||||||||| | ||||| ||| |  ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36985 catccaataatcagt-ctaaagcccgaatatacgattcttaaccctagaatcccttattgtactttttgcaagtacagttg 37064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 49913 - 49946
Alignment:
Q  75 cctagaatcccttattgtactttttgcaagtaca 108  Q
    ||||||||||||||||||||||||||||||||||    
T  49913 cctagaatcccttattgtactttttgcaagtaca 49946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 12138 - 12212
Alignment:
Q  33 atccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 108  Q
    |||||||||||| | |||||||||||  ||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  12138 atccaataatcagt-ctaaaaccctaatatatgattcttaaccctagaatcccttattgtactttttgcaagtaca 12212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 24949 - 25027
Alignment:
Q  33 atccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagttg 112  Q
    |||||||||||| | |||||||||||  ||||| ||||||| |||||||||| |||||||||||||||||||||||||||    
T  24949 atccaataatcagt-ctaaaaccctaagatacgtttcttaaccctagaatcctttattgtactttttgcaagtacagttg 25027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 109
Target Start/End: Original strand, 27608 - 27683
Alignment:
Q  33 atccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacag 109  Q
    |||||||||||||| |||||||||||  ||||| ||||||| |||||||||| ||| ||||||||||||||||||||    
T  27608 atccaataatcaat-ctaaaaccctaatatacgtttcttaaccctagaatcctttactgtactttttgcaagtacag 27683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 10472 - 10398
Alignment:
Q  33 atccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 108  Q
    |||||||||||| | |||||||| ||  ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10472 atccaataatcagt-ctaaaaccttaatatacgattcttaaccctagaatcccttattgtactttttgcaagtaca 10398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 50 - 141
Target Start/End: Original strand, 20442638 - 20442739
Alignment:
Q  50 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtacag----------ttgtgggaaaaggtaaaactaacctagac 138  Q
    |||||||||| ||||||||||||| |||||||| ||||||||||||||| |||||||||||          |||||||||||||||||||||||||||||    
T  20442638 aaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttatgcaagtacagttggcgccgtttgtgggaaaaggtaaaactaacctagac 20442736  T
Q  139 cac 141  Q
    |||    
T  20442737 cac 20442739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 12020227 - 12020169
Alignment:
Q  50 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtaca 108  Q
    |||||| ||||||||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  12020227 aaaaccatagaatacgattcttaaccctagaat-ccttattgtacttttctgcaagtaca 12020169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 141
Target Start/End: Complemental strand, 24280944 - 24280843
Alignment:
Q  51 aaaccctagaata-cgattcttaatcctagaatcccttattgtactttt-tgcaagtacagt----------tgtgggaaaaggtaaaactaacctagac 138  Q
    ||||||||| ||| |||||||||| |||||||| ||||||||||||||| ||||||||||||          ||||||||||||||||||||||||||||    
T  24280944 aaaccctagtataacgattcttaaccctagaat-ccttattgtacttttgtgcaagtacagttggcgccgtctgtgggaaaaggtaaaactaacctagac 24280846  T
Q  139 cac 141  Q
    |||    
T  24280845 cac 24280843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 20514499 - 20514564
Alignment:
Q  50 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtacagttgtgg 115  Q
    |||||||||| ||||||||||||| |||||||| ||||||||||||||| |||||||| ||| ||||    
T  20514499 aaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttatgcaagtatagtagtgg 20514564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 33295706 - 33295767
Alignment:
Q  51 aaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagttg 112  Q
    ||||||||||||||||| || || ||||| ||||  |||||| |||||||||||||||||||    
T  33295706 aaaccctagaatacgatactgaaccctagtatcctctattgtgctttttgcaagtacagttg 33295767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 18433322 - 18433375
Alignment:
Q  55 cctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtaca 108  Q
    ||||| ||||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  18433322 cctagtatacgattcttaaccctagaat-ccttattgtacttttctgcaagtaca 18433375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 19749646 - 19749709
Alignment:
Q  50 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttt--tgcaagtacagttg 112  Q
    |||||||||  | ||||||||||| |||||||| |||||||||||||||  ||||||||||||||    
T  19749646 aaaaccctaatagacgattcttaaccctagaat-ccttattgtactttttctgcaagtacagttg 19749709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 15142653 - 15142606
Alignment:
Q  51 aaaccctagaatacgattcttaatcctagaatcccttattgtacttttt 99  Q
    ||||||||  ||||||||||||| |||||||| ||||||||||||||||    
T  15142653 aaaccctaatatacgattcttaaccctagaat-ccttattgtacttttt 15142606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 15158067 - 15158017
Alignment:
Q  63 acgattcttaatcctagaatcccttattgtactttt--tgcaagtacagttg 112  Q
    ||||||||||| |||||||| |||||||||||||||  ||||||||||||||    
T  15158067 acgattcttaaccctagaat-ccttattgtactttttctgcaagtacagttg 15158017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0888 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 4198 - 4260
Alignment:
Q  50 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagttg 112  Q
    ||||||||| |||| ||||||||| ||||||||| | ||||||||||||||||||||||||||    
T  4198 aaaaccctaaaataagattcttaaccctagaatcacctattgtactttttgcaagtacagttg 4260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 135786 - 135724
Alignment:
Q  50 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtacagttg 112  Q
    |||||||||  ||||||||||||| ||||||||| | ||||||||||||||||||||||||||    
T  135786 aaaaccctaatatacgattcttaaccctagaatcacctattgtactttttgcaagtacagttg 135724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 133480 - 133405
Alignment:
Q  31 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 108  Q
    |||||||||||||| ||| |||||||||  ||||||||||||| ||||||||| | ||||||||||||||||||||||    
T  133480 gcatccaataatca-ttc-aaaaccctaatatacgattcttaaccctagaatcacctattgtactttttgcaagtaca 133405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 138009 - 137934
Alignment:
Q  31 gcatccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 108  Q
    |||||||||||||| ||| |||||||||  ||||||||||||| ||||||||| | ||||||||||||||||||||||    
T  138009 gcatccaataatca-ttc-aaaaccctaatatacgattcttaaccctagaatcacctattgtactttttgcaagtaca 137934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 194710 - 194788
Alignment:
Q  33 atccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtacagttg 112  Q
    |||||||||||| | |||||||||||| ||||||||||||| |||||||| ||||||||||||||| ||| ||||||||||    
T  194710 atccaataatcagt-ctaaaaccctagtatacgattcttaaccctagaat-ccttattgtacttttatgcgagtacagttg 194788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 96260 - 96200
Alignment:
Q  48 ctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttttgcaagtaca 108  Q
    |||||||||||  ||||||||||||| ||||||||  ||||||||||||||||||||||||    
T  96260 ctaaaaccctaatatacgattcttaaccctagaatttcttattgtactttttgcaagtaca 96200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 7667 - 7730
Alignment:
Q  33 atccaataatcaattctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttt 98  Q
    |||||||||||| | |||||||||||| ||||||||||||| |||||||| |||||||||||||||    
T  7667 atccaataatcagt-ctaaaaccctagtatacgattcttaaccctagaat-ccttattgtactttt 7730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 13011 - 12945
Alignment:
Q  47 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtac--tttttgcaagtacagttg 112  Q
    ||||||||||||| |||||||||| || |||||||| |||||||||||  ||||||||||||||||||    
T  13011 tctaaaaccctagcatacgattctcaaccctagaat-ccttattgtactttttttgcaagtacagttg 12945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 98
Target Start/End: Original strand, 4371 - 4421
Alignment:
Q  47 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtactttt 98  Q
    ||||||||||||| ||||||||||||| |||||||| |||||||||||||||    
T  4371 tctaaaaccctagtatacgattcttaaccctagaat-ccttattgtactttt 4421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 1517 - 1451
Alignment:
Q  47 tctaaaaccctagaata-cgattcttaatcctagaatcccttattgtactttt-tgcaagtacagttg 112  Q
    ||||||||||||| ||| |||||||||| |||||||| ||||||||||||||| ||||||||||||||    
T  1517 tctaaaaccctagtataacgattcttaaccctagaat-ccttattgtacttttgtgcaagtacagttg 1451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 44384 - 44319
Alignment:
Q  47 tctaaaaccctagaatacgattcttaatcctagaatcccttattgta-ctttttgcaagtacagttg 112  Q
    ||||||||||||  ||||||||||||| |||||||| |||||||||| |||| ||||||||||||||    
T  44384 tctaaaaccctaatatacgattcttaaccctagaat-ccttattgtacctttctgcaagtacagttg 44319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 78807 - 78870
Alignment:
Q  50 aaaaccctagaatacgattcttaatcctagaatcccttattgtactttt--tgcaagtacagttg 112  Q
    |||||||||| ||||||||||||| |||||||| ||||| |||||||||  ||||||||||||||    
T  78807 aaaaccctagtatacgattcttaaccctagaat-ccttactgtactttttgtgcaagtacagttg 78870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 98
Target Start/End: Complemental strand, 2891 - 2856
Alignment:
Q  63 acgattcttaatcctagaatcccttattgtactttt 98  Q
    ||||||||||| ||||||||||||||||||||||||    
T  2891 acgattcttaaccctagaatcccttattgtactttt 2856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 3897 - 3849
Alignment:
Q  47 tctaaaaccctagaatacgattcttaatcctagaatcccttattgtact 95  Q
    ||||||||||||  ||||||||||||| | |||||||| ||||||||||    
T  3897 tctaaaaccctaatatacgattcttaaccttagaatcctttattgtact 3849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 150019 - 150074
Alignment:
Q  53 accctagaatacgattcttaatcctagaatcccttattgtactttt-tgcaagtaca 108  Q
    ||||||| ||||||||||||| | |||||| ||||||||||||||| ||||||||||    
T  150019 accctagtatacgattcttaaccatagaat-ccttattgtacttttatgcaagtaca 150074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University