View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_low_34 (Length: 389)
Name: NF17408_low_34
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 379
Target Start/End: Original strand, 33250184 - 33250544
Alignment:
| Q |
19 |
tcactatgcatgcttcttctcttatcattctttttcttcacatgtttctcatcaaaacctaataatcaccatgtaaatgactcattctctctttctttcc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33250184 |
tcactatgcatgcttcttctcttatcattctttttcttcacatgtttctcatcaaaacctaataatcaccatgtaaatgactcattctctctttctttcc |
33250283 |
T |
|
| Q |
119 |
ctctaacatctcttcaaatctccacaaactccaaaacaaaaaccaaccaacaattcacaacactttcatcttcatcttcttcttccataaatgttaaatc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33250284 |
ctctaacatctcttcaaatctccacaaactccaaaacaaaaaccaaccaacaattcacaacactttcatcttcatcttcttcttccataaatgttaaatc |
33250383 |
T |
|
| Q |
219 |
atctttcaaatattctatggctcttgttgtgactcttcccattggcacaccaccacagcttcaacaaatggttttagacacaggaagccaactttcatgg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33250384 |
atctttcaaatattctatggctcttgttgtgactcttcccattggcacaccaccacagcttcaacaaatggttttagacacaggaagccaactttcatgg |
33250483 |
T |
|
| Q |
319 |
attcaatgtcacaacnnnnnnncaccacaaaagaaacaacctcctacaacttcatcctttg |
379 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||| |||||||| |||| |
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| T |
33250484 |
attcaatgtcacaacaaaaaaacaccacaaaagaaacaacctcctactacttcatcgtttg |
33250544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 225 - 379
Target Start/End: Original strand, 33264482 - 33264636
Alignment:
| Q |
225 |
caaatattctatggctcttgttgtgactcttcccattggcacaccaccacagcttcaacaaatggttttagacacaggaagccaactttcatggattcaa |
324 |
Q |
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||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||| |
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| T |
33264482 |
caaatattctatggcccttgttgtgactcttcccattggaacaccaccacagcttcaacaaatggttttggatacaggaagccaagtttcatggattcac |
33264581 |
T |
|
| Q |
325 |
tgtcacaacnnnnnnncaccacaaaagaaacaacctcctacaacttcatcctttg |
379 |
Q |
| |
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||| ||||| |||||||||||||||||||||||| |||||||| |||| |
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| T |
33264582 |
tgtgacaacaaaaaaggaccacaaaagaaacaacctcctacgacttcatcgtttg |
33264636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 33264315 - 33264424
Alignment:
| Q |
19 |
tcactatgcatgcttcttctcttatcattctttttcttcacatgtttctcatcaaaacctaataatcacc---atgtaaatgactcattctctctttctt |
115 |
Q |
| |
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||||| ||||||||| || |||| || ||||||||||||||||||||||||||||||| |||||| |||| |||| || ||||| ||||| ||||||| |
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| T |
33264315 |
tcactctgcatgcttgttttcttctctttctttttcttcacatgtttctcatcaaaacataataaacaccacaatgttaacgactctttctccctttctt |
33264414 |
T |
|
| Q |
116 |
tccctctaac |
125 |
Q |
| |
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|||||||||| |
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|
| T |
33264415 |
tccctctaac |
33264424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 19 - 374
Target Start/End: Original strand, 50236673 - 50237036
Alignment:
| Q |
19 |
tcactatgcatgcttcttctcttatcattctttttcttcacatgtttctcatcaaaacctaataatcaccatgtaaatgactcattctctctttctttcc |
118 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
50236673 |
tcactgtgcatgcttcttctcttatcattctttttcttcacatgtttctcatcaaaacctaataatcaccatgtaaatgactcattctccctttcgttcc |
50236772 |
T |
|
| Q |
119 |
ctcta-------acatctcttcaaatctccacaaactccaaaacaaaaaccaaccaacaattcacaacactttcatcttcatcttcttcttccataaatg |
211 |
Q |
| |
|
||||| || |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50236773 |
ctctagtctctaacctctcttcaaatctccataaactccaaaccaaaaaccaaccaacaattcacaacactttcatcttcatcttcttcttccataaatg |
50236872 |
T |
|
| Q |
212 |
ttaaatcatctttcaaatattctatggctcttgttgtgactcttcccattggcacaccaccacagcttcaacaaat-ggttttagacacaggaagccaac |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||| || || |||||||||||| |
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|
| T |
50236873 |
ttaaatcatctttcaaatattctatggctcttgttctgactcttcccattggcacaccaccacaacttcaacaaatgggtattggatacaggaagccaaa |
50236972 |
T |
|
| Q |
311 |
tttcatggattcaatgtcacaacnnnnnnncaccacaaaagaaacaacctcctacaacttcatc |
374 |
Q |
| |
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||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||| |
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|
| T |
50236973 |
tttcatggattcagtgtcacaacaaaaaagcaccgcaaaagaaacaacctcctacaacttcatc |
50237036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 332
Target Start/End: Original strand, 29395166 - 29395242
Alignment:
| Q |
256 |
cccattggcacaccaccacagcttcaacaaatggttttagacacaggaagccaactttcatggattcaatgtcacaa |
332 |
Q |
| |
|
|||||||| |||||||| || ||||| |||||| || ||||| || |||||||||||||||||||| |||||||| |
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|
| T |
29395166 |
cccattggaacaccacctcaaactcaaccaatggtgttggacactggtagccaactttcatggattcagtgtcacaa |
29395242 |
T |
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