View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17408_low_35 (Length: 382)
Name: NF17408_low_35
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_35 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 15 - 366
Target Start/End: Complemental strand, 35744531 - 35744180
Alignment:
| Q |
15 |
gaagatgaacaaaagaaagaattcagtccaaagtcaagttcatttggaaaattcgtagcgagaacctcttcattttcagatagtagctgctcatctcctc |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35744531 |
gaagatgaacaaaagaaagaattcagtccaaagtcaagttcatttggaaaattcgtagcgagaacctcttcattttcagatagtagctgctcatctcctc |
35744432 |
T |
|
| Q |
115 |
taacacctagatctgtgctccctgaattcatgaaacactcttcaagatctagtgaaagtccaagaagttcctgtgcctcaccgcgtctttggtctcttag |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35744431 |
taacacctagatctgtgctccctgaattcatgaaacactcttcaagatctagtgaaagtccaagaagttcctgtgcctcaccgcgtctttggtctcttag |
35744332 |
T |
|
| Q |
215 |
agtccaagctgttggaaagttgaatccagttgaagttaaacgtttgtctttcaatatgtcaccaacgcatatcgtaaaaatagacgaggaaccaataaca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35744331 |
agtccaagctgttggaaagttgaatccagttgaagttaaacgtttgtctttcaatatgtcaccaacgcatatcgtaaaaatagacgaggaaccaataaca |
35744232 |
T |
|
| Q |
315 |
gaaatggaagtggatgataataagcctgtaaaggatacatcagaggatcttg |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35744231 |
gaaatggaagtggatgataataagcctgtaaaggatacatcagaggatcttg |
35744180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University