View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17408_low_36 (Length: 380)

Name: NF17408_low_36
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17408_low_36
NF17408_low_36
[»] chr7 (6 HSPs)
chr7 (20-363)||(18658790-18659133)
chr7 (20-363)||(21111668-21112011)
chr7 (51-363)||(21130628-21130940)
chr7 (181-359)||(21098402-21098580)
chr7 (269-359)||(21108109-21108199)
chr7 (316-356)||(29213203-29213243)
[»] chr4 (1 HSPs)
chr4 (94-363)||(39131839-39132108)
[»] chr3 (10 HSPs)
chr3 (286-359)||(26714027-26714100)
chr3 (262-356)||(47212441-47212535)
chr3 (283-356)||(26690342-26690415)
chr3 (283-356)||(26731653-26731726)
chr3 (286-359)||(26737263-26737336)
chr3 (286-359)||(26744274-26744347)
chr3 (286-359)||(26751199-26751272)
chr3 (286-356)||(26698878-26698948)
chr3 (283-356)||(26694503-26694576)
chr3 (286-356)||(26734041-26734111)


Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 20 - 363
Target Start/End: Complemental strand, 18659133 - 18658790
Alignment:
Q  20 ttggtggtttagaatcctttttctttgttgcggtttgtggttttttaattaagaccaagaaaaattctagtggagatcaacataactatcatcatttatt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18659133 ttggtggtttagaatcctttttctttgttgcggtttgtggttttttaattaagaccaagaaaaattctagtggagatcaacataactatcatcatgtatt 18659034  T
Q  120 attgggattcagaagatatagttactccgagttgaagatagcaacaaagaatttcagtaatgagattggaagaggtggaggagggattgtatatagaggt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18659033 attgggattcagaagatatagttactccgagttgaagatagcaacaaagaatttcagtaatgagattggaagaggtggaggagggattgtatatagaggt 18658934  T
Q  220 acattgccagatcaaagacatgcagcaataaagagattaaatgaagctaaacaaggagaaggagaatttcttgctgaagtaagcatcattggacgactta 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18658933 acattgccagatcaaagacatgcagcaataaagagattaaatgaagctaaacaaggagaaggagaatttcttgctgaagtaagcatcattggacggctta 18658834  T
Q  320 accacatgaatttgattgaaatgtggggatattgtgctgaaggt 363  Q
    |||||||||| |||||||| ||||||||||||||||||||||||    
T  18658833 accacatgaacttgattgatatgtggggatattgtgctgaaggt 18658790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 20 - 363
Target Start/End: Complemental strand, 21112011 - 21111668
Alignment:
Q  20 ttggtggtttagaatcctttttctttgttgcggtttgtggttttttaattaagaccaagaaaaattctagtggagatcaacataactatcatcatttatt 119  Q
    ||||||| || |||| |||||||||||||| ||||||| |||||||||| |||||| |||||||  ||| |||||||| ||||||||||||||||  |||    
T  21112011 ttggtggcttggaattctttttctttgttgtggtttgttgttttttaatcaagaccgagaaaaagcctaatggagatcgacataactatcatcatgcatt 21111912  T
Q  120 attgggattcagaagatatagttactccgagttgaagatagcaacaaagaatttcagtaatgagattggaagaggtggaggagggattgtatatagaggt 219  Q
    ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21111911 atttggattcagaagatacagttactccgagttgaagatagcaacaaagaatttcagtaatgagattggaagaggtggaggagggattgtatatagaggt 21111812  T
Q  220 acattgccagatcaaagacatgcagcaataaagagattaaatgaagctaaacaaggagaaggagaatttcttgctgaagtaagcatcattggacgactta 319  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||    
T  21111811 acattgccagatgaaagacatgtagcaataaagagattaaatgaagctaaacaaggagaaggagaatttcttgccgaagtaagtatcattggacggctta 21111712  T
Q  320 accacatgaatttgattgaaatgtggggatattgtgctgaaggt 363  Q
    |||||||||| ||||| |||||||||||||||||||||||||||    
T  21111711 accacatgaacttgatagaaatgtggggatattgtgctgaaggt 21111668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 51 - 363
Target Start/End: Complemental strand, 21130940 - 21130628
Alignment:
Q  51 ggtttgtggttttttaattaagaccaagaaaaattctagtggagatcaacataactatcatcatttattattgggattcagaagatatagttactccgag 150  Q
    |||||||||||||||||||||||||| |||||||||||||| | ||||||||| |||||||| |  |||||| |||||||||||||| | ||||||||||    
T  21130940 ggtttgtggttttttaattaagaccaggaaaaattctagtgcaaatcaacatagctatcatcttacattattaggattcagaagatacacttactccgag 21130841  T
Q  151 ttgaagatagcaacaaagaatttcagtaatgagattggaagaggtggaggagggattgtatatagaggtacattgccagatcaaagacatgcagcaataa 250  Q
    |||||| |||| ||||| ||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||| ||||||||| ||||||||||||    
T  21130840 ttgaaggtagcgacaaaaaatttcagtaacgagattggaagaggtggaggaggagttgtatatagaggtacattgccggatcaaagagatgcagcaataa 21130741  T
Q  251 agagattaaatgaagctaaacaaggagaaggagaatttcttgctgaagtaagcatcattggacgacttaaccacatgaatttgattgaaatgtggggata 350  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |   |||||||||||||||||||||||||||||||||||    
T  21130740 agagattgaatgaagctaaacaaggagaaggagagtttcttgctgaagtaagcatcattgaaaagcttaaccacatgaatttgattgaaatgtggggata 21130641  T
Q  351 ttgtgctgaaggt 363  Q
    ||||| |||||||    
T  21130640 ttgtgttgaaggt 21130628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 181 - 359
Target Start/End: Original strand, 21098402 - 21098580
Alignment:
Q  181 gagattggaagaggtggaggagggattgtatatagaggtacattgccagatcaaagacatgcagcaataaagagattaaatgaagctaaacaaggagaag 280  Q
    |||||||||||||||||||||||  ||||||| | ||| | |||  | |||  ||||||||| |||||||||||| |  |  | ||  ||||||| ||||    
T  21098402 gagattggaagaggtggaggaggtgttgtatacaaaggcatattatctgatggaagacatgctgcaataaagagactttacaatgcacaacaaggtgaag 21098501  T
Q  281 gagaatttcttgctgaagtaagcatcattggacgacttaaccacatgaatttgattgaaatgtggggatattgtgctga 359  Q
    | |||||||| ||||||||| | ||||||||| | ||||| |||||||||||||| ||||||||||||||||| |||||    
T  21098502 gtgaatttctagctgaagtaggaatcattggaaggcttaatcacatgaatttgatcgaaatgtggggatattgcgctga 21098580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 269 - 359
Target Start/End: Original strand, 21108109 - 21108199
Alignment:
Q  269 aacaaggagaaggagaatttcttgctgaagtaagcatcattggacgacttaaccacatgaatttgattgaaatgtggggatattgtgctga 359  Q
    ||||||||||||| |||||||| ||||||||| | ||||||||| | ||||| |||||||||||||| ||||||||||||||||| |||||    
T  21108109 aacaaggagaaggtgaatttctagctgaagtaggaatcattggaaggcttaatcacatgaatttgatcgaaatgtggggatattgcgctga 21108199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 29213243 - 29213203
Alignment:
Q  316 cttaaccacatgaatttgattgaaatgtggggatattgtgc 356  Q
    |||||||||||||||||||||||| ||||||| ||||||||    
T  29213243 cttaaccacatgaatttgattgaattgtggggttattgtgc 29213203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 94 - 363
Target Start/End: Original strand, 39131839 - 39132108
Alignment:
Q  94 gatcaacataactatcatcatttattattgggattcagaagatatagttactccgagttgaagatagcaacaaagaatttcagtaatgagattggaagag 193  Q
    |||||| ||| ||||||||||  ||||||||||||||||||||| |||||||| ||||||||| | ||||| ||||||||||||||||||||||||| ||    
T  39131839 gatcaaaatagctatcatcatacattattgggattcagaagatacagttactcggagttgaaggtggcaaccaagaatttcagtaatgagattggaaaag 39131938  T
Q  194 gtggaggagggattgtatatagaggtacattgccagatcaaagacatgcagcaataaagagattaaatgaagctaaacaaggagaaggagaatttcttgc 293  Q
    | ||||||||| |||||||   |||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||    
T  39131939 gcggaggaggggttgtatacctaggtacattgccggatcaaagacaagcagcaataaagagattgaatgaagctaatcaaggggaaggagagtttcttgc 39132038  T
Q  294 tgaagtaagcatcattggacgacttaaccacatgaatttgattgaaatgtggggatattgtgctgaaggt 363  Q
    ||||||||||||||| ||| | || || |||||||| || |||||||||||||||||||||| |||||||    
T  39132039 tgaagtaagcatcatcggaaggctcaatcacatgaacttaattgaaatgtggggatattgtgttgaaggt 39132108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 286 - 359
Target Start/End: Complemental strand, 26714100 - 26714027
Alignment:
Q  286 tttcttgctgaagtaagcatcattggacgacttaaccacatgaatttgattgaaatgtggggatattgtgctga 359  Q
    |||||||| ||||| |||||||||||| | |||||||||||||||||||||| ||||||||| |||||||||||    
T  26714100 tttcttgcagaagttagcatcattggaaggcttaaccacatgaatttgattggaatgtggggttattgtgctga 26714027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 262 - 356
Target Start/End: Complemental strand, 47212535 - 47212441
Alignment:
Q  262 gaagctaaacaaggagaaggagaatttcttgctgaagtaagcatcattggacgacttaaccacatgaatttgattgaaatgtggggatattgtgc 356  Q
    ||||| || ||||| |||| ||| ||||| || |||||||||| |||||||   |||||||||||||||||||||||||||||||| ||||||||    
T  47212535 gaagcaaatcaaggcgaagaagagtttctcgcagaagtaagcagcattggaaagcttaaccacatgaatttgattgaaatgtggggttattgtgc 47212441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 356
Target Start/End: Original strand, 26690342 - 26690415
Alignment:
Q  283 gaatttcttgctgaagtaagcatcattggacgacttaaccacatgaatttgattgaaatgtggggatattgtgc 356  Q
    ||||||||||||||||| ||| |||||||| | ||||||||||||||||||||||  |||||||| ||||||||    
T  26690342 gaatttcttgctgaagttagcgtcattggaaggcttaaccacatgaatttgattggtatgtgggggtattgtgc 26690415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 356
Target Start/End: Original strand, 26731653 - 26731726
Alignment:
Q  283 gaatttcttgctgaagtaagcatcattggacgacttaaccacatgaatttgattgaaatgtggggatattgtgc 356  Q
    ||||||||||||||||| ||| |||||||| | ||||||||||||||||||||||  |||||||| ||||||||    
T  26731653 gaatttcttgctgaagttagcgtcattggaaggcttaaccacatgaatttgattggtatgtgggggtattgtgc 26731726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 286 - 359
Target Start/End: Complemental strand, 26737336 - 26737263
Alignment:
Q  286 tttcttgctgaagtaagcatcattggacgacttaaccacatgaatttgattgaaatgtggggatattgtgctga 359  Q
    |||||||| ||||| |||||||||||| | ||||||||||||||||| |||| ||||||||| |||||||||||    
T  26737336 tttcttgcagaagttagcatcattggaaggcttaaccacatgaatttaattggaatgtggggttattgtgctga 26737263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 286 - 359
Target Start/End: Complemental strand, 26744347 - 26744274
Alignment:
Q  286 tttcttgctgaagtaagcatcattggacgacttaaccacatgaatttgattgaaatgtggggatattgtgctga 359  Q
    ||||||||||||||||||||||||||| | |||||||||||||| || ||||  |||||||| |||||||||||    
T  26744347 tttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttaattggtatgtggggctattgtgctga 26744274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 286 - 359
Target Start/End: Complemental strand, 26751272 - 26751199
Alignment:
Q  286 tttcttgctgaagtaagcatcattggacgacttaaccacatgaatttgattgaaatgtggggatattgtgctga 359  Q
    |||||||| ||||| |||||||||||| | ||||||||||||||||||||||  |||||||| |||||||||||    
T  26751272 tttcttgccgaagttagcatcattggaaggcttaaccacatgaatttgattggtatgtggggttattgtgctga 26751199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 26698948 - 26698878
Alignment:
Q  286 tttcttgctgaagtaagcatcattggacgacttaaccacatgaatttgattgaaatgtggggatattgtgc 356  Q
    |||||||||||||| |||||||||||| | ||||| |||||||||||||| | ||||||||| ||||||||    
T  26698948 tttcttgctgaagttagcatcattggaaggcttaatcacatgaatttgataggaatgtggggttattgtgc 26698878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 283 - 356
Target Start/End: Original strand, 26694503 - 26694576
Alignment:
Q  283 gaatttcttgctgaagtaagcatcattggacgacttaaccacatgaatttgattgaaatgtggggatattgtgc 356  Q
    ||||||||||||||| | ||| |||||||| | ||||||||||||||||||||||  |||||||| ||||||||    
T  26694503 gaatttcttgctgaacttagcgtcattggaaggcttaaccacatgaatttgattggtatgtgggggtattgtgc 26694576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 26734111 - 26734041
Alignment:
Q  286 tttcttgctgaagtaagcatcattggacgacttaaccacatgaatttgattgaaatgtggggatattgtgc 356  Q
    ||||||| |||||| |||||||||||| | ||||| |||||||||||||| | ||||||||| ||||||||    
T  26734111 tttcttgttgaagttagcatcattggaaggcttaatcacatgaatttgataggaatgtggggttattgtgc 26734041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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