View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17408_low_4 (Length: 778)
Name: NF17408_low_4
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_4 |
 | |
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| [»] scaffold0009 (3 HSPs) |
| | |
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| [»] scaffold0031 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 729; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 729; E-Value: 0
Query Start/End: Original strand, 14 - 770
Target Start/End: Complemental strand, 47650794 - 47650038
Alignment:
| Q |
14 |
aaaaagaaaaagaagagcgctactggaaaattgcatgatgttattccaacagataaaatggtagctgttggatcaggagctgctaattttgtgactgaga |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47650794 |
aaaaagaaaaagaagagcgctactggaaaattgcatgatgttattccgacagataaaatggtagctgttggatcaggagctgctaattttgtgactgaga |
47650695 |
T |
|
| Q |
114 |
tctctattgttgtcttaaaaaatgcaccttttaatgtcaagaaatggagaaaaattccacaagagacagaaaacaagatagtatcaaaagttttggtaaa |
213 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47650694 |
tctctatcgttgtcttaaaaaatgcaccttttaatgtcaagaaatggagaaaaattccacaagagacagaaaacaagatagtatcaaaagttttggtaaa |
47650595 |
T |
|
| Q |
214 |
tcataatcttgtgccttttaattttatttgattgcttttacagagcactcactatagttttcattttaactgttgagagcaggatacttttgatattgat |
313 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47650594 |
tcataatcttgtgccttttaattttatttgattgcttttacagagtactcactatagttttcattttaactgttgagagcaggatacttttgatattgat |
47650495 |
T |
|
| Q |
314 |
aatacaaagcataacagagatgttattattgatattgctaaaagactatatcgaaatcatagatgtagatttcgtaaacactttagccaatacaagacaa |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47650494 |
aatacaaagcataacagagatgttattattgatactgctaaaagactatatcgaaatcatagatgtagatttcgtaaacactttagccaatacaagacaa |
47650395 |
T |
|
| Q |
414 |
atgagatagccttggaacataaaccagatgatttaagtgacgaagattggaagtacttggtagattatttttcaagtcctgaattcaaggtatgtttgta |
513 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47650394 |
atgagatagccttggaacataaaccagatgatttaagtgacgaagattggaagtacttggtagattatttttcaagtcctgaattcaaggtatgtttgta |
47650295 |
T |
|
| Q |
514 |
ttagatttactatataaatataggtaatttaattttatacgtaaacatatacgatatttctacttgtattatttacaggaaattagtaacaggaacaaat |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
47650294 |
ttagatttactatataaatataggtaatttaattttatacgtaaacatatactatatttctacttgtattatttacaggaaattagttacaggaacaaat |
47650195 |
T |
|
| Q |
614 |
caaataaatctaaacaagttataaatcatagatgtggaaggaagtcatttcaagccgttagctatgatgcggtaaaatataaaatatcaaatctcctttt |
713 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47650194 |
caaataaatctaaacaagttataaatcatagatgtggaaggaagtcatttcaagccgttagctatgatgcggtaaaatataaaatatcaaatctcctttt |
47650095 |
T |
|
| Q |
714 |
gttggtatatttgtcattgacttgataacttatatgtatttatattttgtgatgatg |
770 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
47650094 |
gttggtatatttgtcattgacttgataacttacatgtatttatattttgtgatgatg |
47650038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 292; Significance: 1e-163; HSPs: 3)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 211 - 572
Target Start/End: Original strand, 170283 - 170641
Alignment:
| Q |
211 |
aaatcataatcttgtgccttttaattttatttgattgcttttacagagcactcactatagttttcattttaactgttgagagcaggatacttttgatatt |
310 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||| | |||| ||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
170283 |
aaatcataatcttgtgcctttttattttatttgattgcttttacata---ctcattatagttttcattttaattgttgagtgcaggatacttttgatatt |
170379 |
T |
|
| Q |
311 |
gataatacaaagcataacagagatgttattattgatattgctaaaagactatatcgaaatcatagatgtagatttcgtaaacactttagccaatacaaga |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
170380 |
gataatacaaagcataacagagatgttattattgatactgctaaaagactatatcgaaatcatagatgtagatttcataaacactttagccaatacaaga |
170479 |
T |
|
| Q |
411 |
caaatgagatagccttggaacataaaccagatgatttaagtgacgaagattggaagtacttggtagattatttttcaagtcctgaattcaaggtatgttt |
510 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
170480 |
caaatgagatagctttggaacataaaccagatgatttaagtgacgaagattggaagtacttggtagattatttttcaagtcctgaattcaatgtatgttt |
170579 |
T |
|
| Q |
511 |
gtattagatttactatataaatataggtaatttaattttatacgtaaacatatacgatattt |
572 |
Q |
| |
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|||||| |||||||||||||||||||| ||||||||| ||||||||||||| ||| |||||| |
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| T |
170580 |
gtattatatttactatataaatataggcaatttaattctatacgtaaacatctactatattt |
170641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 646 - 762
Target Start/End: Original strand, 170660 - 170777
Alignment:
| Q |
646 |
tgtggaaggaagtcatttcaagccgttagctatgatgcggtaaaatataaaatatcaaatctcc-ttttgttggtatatttgtcattgacttgataactt |
744 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||| |||| | ||||||||||||||||||||||||||| |
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|
| T |
170660 |
tgtggaaggaagtcatttcaagctgttagctatgacgcggtaaaatatataatatcaaatctcctttttcctagtatatttgtcattgacttgataactt |
170759 |
T |
|
| Q |
745 |
atatgtatttatattttg |
762 |
Q |
| |
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|||||||||||||||||| |
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| T |
170760 |
atatgtatttatattttg |
170777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 36 - 136
Target Start/End: Original strand, 170186 - 170286
Alignment:
| Q |
36 |
ctggaaaattgcatgatgttattccaacagataaaatggtagctgttggatcaggagctgctaattttgtgactgagatctctattgttgtcttaaaaaa |
135 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
170186 |
ctggaaaattgcatgttgttattccgacagataaaatggtagctgttggatcaggagctgctaattttgtgactgagatctctactgttgtcctaaaaaa |
170285 |
T |
|
| Q |
136 |
t |
136 |
Q |
| |
|
| |
|
|
| T |
170286 |
t |
170286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 100; Significance: 5e-49; HSPs: 2)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 92391 - 92272
Alignment:
| Q |
14 |
aaaaagaaaaagaagagcgctactggaaaattgcatgatgttattccaacagataaaatggtagctgttggatcaggagctgctaattttgtgactgaga |
113 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
92391 |
aaaaataaaaagaagagcgctactggaaaattgcatgttgttattccgacagataaaatggtagctgttggatcaggagctgctaattttgtgactgagg |
92292 |
T |
|
| Q |
114 |
tctctattgttgtcttaaaa |
133 |
Q |
| |
|
|||||||||||||| ||||| |
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| T |
92291 |
tctctattgttgtcctaaaa |
92272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 693 - 770
Target Start/End: Complemental strand, 92276 - 92197
Alignment:
| Q |
693 |
taaaatatcaaatctcc--ttttgttggtatatttgtcattgacttgataacttatatgtatttatattttgtgatgatg |
770 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
92276 |
taaaatatcaaatctcccttttttttggtatatttatcattgacttgataacttatatgtatttatattttgtgacgatg |
92197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 3e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 594 - 770
Target Start/End: Complemental strand, 30754353 - 30754173
Alignment:
| Q |
594 |
aattagtaacaggaacaaatcaaataaatctaaacaagttataaatcatagatgtggaaggaagtcatttcaagccgttagctatgatgcggtaaaatat |
693 |
Q |
| |
|
||||||||| |||||||||| |||||| |||||||||||||| ||| |||| |||||||||| | |||||||| ||||||||||| |||||| ||||| |
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|
| T |
30754353 |
aattagtaaaaggaacaaattaaataagtctaaacaagttattaattgtagacgtggaaggaatttatttcaagttgttagctatgacgcggtataatat |
30754254 |
T |
|
| Q |
694 |
---aaaatatcaaatctc-cttttgttggtatatttgtcattgacttgataacttatatgtatttatattttgtgatgatg |
770 |
Q |
| |
|
||||||| ||||||| ||||| ||||||||||| |||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
30754253 |
aaaaaaatataaaatctctctttttttggtatatttatcattgacttgataacttatatctaattatattttgtgatgatg |
30754173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 4e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 37333171 - 37332931
Alignment:
| Q |
14 |
aaaaagaaaaagaagagcgctactggaaaattgcatgatgttattccaacagataaaatggtagctgttggatcaggagctgctaattttgtgactgaga |
113 |
Q |
| |
|
|||||||||||||||||| || || ||||||||||| ||||||||| || | |||||| | |||| ||| | |||||| |||||||||| ||||| |
|
|
| T |
37333171 |
aaaaagaaaaagaagagcagtattgaaaaattgcatgttgttattccgacttaaaaaatgc--ggtgtttgattaaaagctgcaaattttgtgattgaga |
37333074 |
T |
|
| Q |
114 |
tctctatt----gttgtcttaaaaaatgcaccttttaatgtcaagaaatggagaaaaattccacaagagacagaaaacaagatagtatcaaaagttttgg |
209 |
Q |
| |
|
|||||||| ||||| || |||||||||| ||||||||||||||||||||||||||||| ||| || |||| |||||||||||| |||||||||| |
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|
| T |
37333073 |
tctctattatacattgtcctacaaaatgcaccgtttaatgtcaagaaatggagaaaaattcctcaaaaggaagaatacaagatagtattaaaagttttga |
37332974 |
T |
|
| Q |
210 |
taaatcataatcttgtgccttttaattttatttgattgctttt |
252 |
Q |
| |
|
||||| |||||||||| |||| ||| ||||| ||||||||| |
|
|
| T |
37332973 |
taaattgtaatcttgtgtttttttattctatttcattgctttt |
37332931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 567 - 643
Target Start/End: Complemental strand, 37332920 - 37332844
Alignment:
| Q |
567 |
atatttctacttgtattatttacaggaaattagtaacaggaacaaatcaaataaatctaaacaagttataaatcata |
643 |
Q |
| |
|
||||||||| |||||||||||||||| |||||| | |||||||||||||||||| | ||||||||||| ||||||| |
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|
| T |
37332920 |
atatttctatttgtattatttacaggcaattagcgaaaggaacaaatcaaataaagcaaaacaagttattaatcata |
37332844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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