View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17408_low_40 (Length: 359)
Name: NF17408_low_40
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_40 |
 | |
|
| [»] scaffold0231 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 343
Target Start/End: Complemental strand, 35521644 - 35521304
Alignment:
| Q |
17 |
taggcgtgtaaactcgttattacctaataaagatgctaatttatctcatttatagtagagaggtctgttagttcttccctagttattagtttt------g |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
35521644 |
taggcgtgtaaactcgttattacctaataaagatgctaatttatctcatttatagtagagaggtcggttagttcttccctagttattagttttacatcag |
35521545 |
T |
|
| Q |
111 |
ttacagtacttcaatagttttataactttgtcaattcctcttt-------ctctatgtaaatcagatttttacacaacaataaaatgagaattacatctc |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||| || || | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35521544 |
ttacagtacttcaatagttttataactttgtatataaatcaataatagctctctatgtaaatcagatttttacacaacaataaaatgagaattacatctc |
35521445 |
T |
|
| Q |
204 |
aattcc-tctttctctgatattcaatatggtatcagattagctcacttccgcttttcttctggcgattgtgtttcttcgctgttcatcaatggagactca |
302 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
35521444 |
aattccctctttctctgatattcaatatggtatcagattagctcacttccgcttttcttctggcgattgtgtttcttcgatgttcatcaatggagactca |
35521345 |
T |
|
| Q |
303 |
acatttcgctgattttgccacaaaccctaccaatccatatt |
343 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35521344 |
acctttcgctgattttgccacaaaccctaccaatccctatt |
35521304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 34 - 229
Target Start/End: Complemental strand, 35516943 - 35516733
Alignment:
| Q |
34 |
tattacctaataaagatgctaatttatctcatt--tatagtagagaggtctgttagttcttccctagttattagtttt------gttacagtacttcaat |
125 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
35516943 |
tattatctaataaagatgctaatttatctcattattatagtagagaagtctgttagttcttccctagttattagttttacatcagttatagtacttcaat |
35516844 |
T |
|
| Q |
126 |
agttttataactttgtcaattcctcttt-------ctctatgtaaatcagatttttacacaacaataaaatgagaattacatctcaattcctctttctct |
218 |
Q |
| |
|
|||||||||||||||| || || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35516843 |
agttttataactttgtatataaatcaatagcagctctctatgtaaatcagatttttacacaacaataaaatgagaattacatctcaattcccctttctct |
35516744 |
T |
|
| Q |
219 |
gatattcaata |
229 |
Q |
| |
|
||||||||||| |
|
|
| T |
35516743 |
gatattcaata |
35516733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 3e-64; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 34 - 230
Target Start/End: Original strand, 33769091 - 33769300
Alignment:
| Q |
34 |
tattacctaataaagatgctaatttatctcatttatagtagagaggtctgttagttcttccctagttattagtttt------gttacagtacttcaatag |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33769091 |
tattacctaataaagatgctaatttatctcatttatagtagagaagtctgttagttctcccctagttattagttttacatcagttacagtacttcaatag |
33769190 |
T |
|
| Q |
128 |
ttttataactttgtcaattcctcttt-------ctctatgtaaatcagatttttacacaacaataaaatgagaattacatctcaattcctctttctctga |
220 |
Q |
| |
|
|||||||||||||| || || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33769191 |
ttttataactttgtatataaatcaatagcagctctctatgtaaatcagatttttacacaacaataaaatgagaattacatctcaattcctctttctctga |
33769290 |
T |
|
| Q |
221 |
tattcaatat |
230 |
Q |
| |
|
|||||||||| |
|
|
| T |
33769291 |
tattcaatat |
33769300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 33 - 141
Target Start/End: Complemental strand, 24236118 - 24236004
Alignment:
| Q |
33 |
ttattacctaataaagatgctaatttatctcatttatagtagagaggtctgttagttcttccctagttattagtttt------gttacagtacttcaata |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
24236118 |
ttattacctaataaagatgctaatttatctcatttatagtagagaagtctgttagttcttccctagttattagttttacatgagttacaatacttcaata |
24236019 |
T |
|
| Q |
127 |
gttttataactttgt |
141 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
24236018 |
gttttataactttgt |
24236004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 154 - 224
Target Start/End: Original strand, 33765311 - 33765381
Alignment:
| Q |
154 |
ctctatgtaaatcagatttttacacaacaataaaatgagaattacatctcaattcctctttctctgatatt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33765311 |
ctctatgtaaatcagatttttacacaacaataaaatgagaattacatctcaattcctctttccctgatatt |
33765381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 33765233 - 33765297
Alignment:
| Q |
45 |
aaagatgctaatttatctcatttatagtagagaggtctgttagttcttccctagttattagtttt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33765233 |
aaagatgctaatttatctcatttatagtagagaagtctgttagttcttccctagttattagtttt |
33765297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 262
Target Start/End: Complemental strand, 30724055 - 30723972
Alignment:
| Q |
180 |
acaataaaatgagaattacatctcaattcctctttctctgatattcaatatggtatca-gattagctcacttccgcttttcttc |
262 |
Q |
| |
|
||||||||||||||||||||||||||||| | | |||||||||| || ||||||||| | || ||||||||| |||||||||| |
|
|
| T |
30724055 |
acaataaaatgagaattacatctcaattcttgctgctctgatatttaagatggtatcatgtttcgctcacttcggcttttcttc |
30723972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 24236003 - 24235962
Alignment:
| Q |
183 |
ataaaatgagaattacatctcaattcctctttctctgatatt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24236003 |
ataaaatgagaattacatctcaattcctctttctatgatatt |
24235962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0231 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: scaffold0231
Description:
Target: scaffold0231; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 33 - 141
Target Start/End: Complemental strand, 2793 - 2679
Alignment:
| Q |
33 |
ttattacctaataaagatgctaatttatctcatttatagtagagaggtctgttagttcttccctagttattagtttt------gttacagtacttcaata |
126 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| |||| |||||||||||| |
|
|
| T |
2793 |
ttattacctaataaagatgctaatttatcccatttatagtagagaagtctgttagttcttccctagttgttagttttacatcagttatagtacttcaata |
2694 |
T |
|
| Q |
127 |
gttttataactttgt |
141 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
2693 |
gttttataactttgt |
2679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0231; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 2678 - 2637
Alignment:
| Q |
183 |
ataaaatgagaattacatctcaattcctctttctctgatatt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2678 |
ataaaatgagaattacatctcaattcctctttctatgatatt |
2637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 34 - 228
Target Start/End: Complemental strand, 12472137 - 12471930
Alignment:
| Q |
34 |
tattacctaataaagatgctaatttatctcatttatagtagagaggtctgttag-ttcttccctagttattagtttt-----gttacagtacttcaatag |
127 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||| || ||||| || || ||||||||||||||| |||||| ||||||||||| |
|
|
| T |
12472137 |
tattacttaataaatatgctaatttatctcatttatagtagagaaatcagttagcttttttcctagttattagtttatgtcagttacaatacttcaatag |
12472038 |
T |
|
| Q |
128 |
ttttataactttgtcaattcctcttt-------ctctatgtaaatcagatttttacacaacaataaaatgagaattacatctcaattcctctttctctga |
220 |
Q |
| |
|
||||| |||||||| || || | |||||||||||||||||||||||| ||||||||||| |||||||||||||| ||| | |||||| || |
|
|
| T |
12472037 |
ttttagaactttgtatataaatcaatagcagctctctatgtaaatcagatttttacataacaataaaataagaattacatctcatttcttatttctcaga |
12471938 |
T |
|
| Q |
221 |
tattcaat |
228 |
Q |
| |
|
||||||| |
|
|
| T |
12471937 |
cattcaat |
12471930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University