View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17408_low_41 (Length: 356)

Name: NF17408_low_41
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17408_low_41
NF17408_low_41
[»] chr8 (3 HSPs)
chr8 (173-342)||(31371653-31371820)
chr8 (18-108)||(31371886-31371976)
chr8 (289-342)||(34872295-34872348)
[»] chr6 (2 HSPs)
chr6 (18-108)||(10461170-10461261)
chr6 (226-342)||(10461380-10461496)
[»] chr7 (6 HSPs)
chr7 (234-342)||(32248433-32248541)
chr7 (18-108)||(32248668-32248759)
chr7 (287-342)||(37502909-37502964)
chr7 (43-108)||(33426698-33426764)
chr7 (291-342)||(33427151-33427202)
chr7 (43-92)||(47815365-47815415)
[»] chr4 (1 HSPs)
chr4 (287-338)||(53239748-53239799)
[»] chr1 (5 HSPs)
chr1 (18-108)||(39482444-39482535)
chr1 (289-342)||(28851849-28851902)
chr1 (174-342)||(39482209-39482371)
chr1 (296-338)||(2170793-2170835)
chr1 (277-333)||(21401733-21401789)


Alignment Details
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 173 - 342
Target Start/End: Complemental strand, 31371820 - 31371653
Alignment:
Q  173 taacactaatttgcggttaatgatctgcagcaagaaaaagggtatcactcaggcactcacaacactaatttgcagttttgtgttcccagcaagnnnnnnn 272  Q
    |||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||           
T  31371820 taacacaaatttgcggttaatgatttgcagcaagaaaaaggg-atcactcaggcactcacgac-ctaatttgcagttttgtgttcccagcaagaaaaaaa 31371723  T
Q  273 ggaggttaccttaaagatgatgaatgttggagagaaaattgtgatggtggttaatgatttgattttgttt 342  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31371722 ggaggttaccttacagatgatgaatgttggagagaaaattgtgatggtggttaatgatttgattttgttt 31371653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 31371976 - 31371886
Alignment:
Q  18 aggaatgctactaatatggactaatttgcttatatgtgggaaactacaaaaactaatttgatagatttaattaaattttgcagttattttt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  31371976 aggaatgctactaatatggactaatttgcttatatgtgggaaactacaaaaactaatttgacagatttaattaaactttgcagttattttt 31371886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 289 - 342
Target Start/End: Complemental strand, 34872348 - 34872295
Alignment:
Q  289 atgatgaatgttggagagaaaattgtgatggtggttaatgatttgattttgttt 342  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34872348 atgatgaatgttggagagaaaattgtgatggcggttaatgatttgattttgttt 34872295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 10461170 - 10461261
Alignment:
Q  18 aggaatgctactaatatggactaatttgcttatatgtgggaaactacaaaaactaatttgataga-tttaattaaattttgcagttattttt 108  Q
    |||||||||||| | ||| |||||||||||||||||| || |||||||| ||||||||||| | | |||||||||| |||||||||||||||    
T  10461170 aggaatgctactgacatgaactaatttgcttatatgtagggaactacaagaactaatttgacaaattttaattaaactttgcagttattttt 10461261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 226 - 342
Target Start/End: Original strand, 10461380 - 10461496
Alignment:
Q  226 cactcacaacactaatttgcagttttgtgttcccagcaagnnnnnnnggaggttaccttaaagatgatgaatgttggagagaaaattgtgatggtggtta 325  Q
    |||||||  |||||| |||||||||||||||||||| |||       ||||||||  ||  |||||||| ||| || |||||||||||| ||||||||||    
T  10461380 cactcacggcactaacttgcagttttgtgttcccagaaagaaaaagaggaggttaagtttcagatgatgtatgatgaagagaaaattgtaatggtggtta 10461479  T
Q  326 atgatttgattttgttt 342  Q
    |||||||| ||||||||    
T  10461480 atgatttggttttgttt 10461496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 234 - 342
Target Start/End: Complemental strand, 32248541 - 32248433
Alignment:
Q  234 acactaatttgcagttttgtgttcccagcaagnnnnnnnggaggttaccttaaagatgatgaatgttggagagaaaattgtgatggtggttaatgatttg 333  Q
    ||||||||||||||||||||||||| || |||       ||| ||||  ||  |||||||||||| || |||||||||||| ||||||||||||||||||    
T  32248541 acactaatttgcagttttgtgttcctagaaagaaaaagaggaagttaagtttcagatgatgaatgatgaagagaaaattgtaatggtggttaatgatttg 32248442  T
Q  334 attttgttt 342  Q
     ||||||||    
T  32248441 gttttgttt 32248433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 32248759 - 32248668
Alignment:
Q  18 aggaatgctactaatatggactaatttgcttatatgtgggaaactacaaaaactaatttgataga-tttaattaaattttgcagttattttt 108  Q
    ||||||||||||   ||| ||||||||||||||| |||||||||||||| ||||||||||| | | |||||||||| ||||||||| |||||    
T  32248759 aggaatgctactggcatgaactaatttgcttatacgtgggaaactacaagaactaatttgacaaattttaattaaactttgcagttgttttt 32248668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 287 - 342
Target Start/End: Complemental strand, 37502964 - 37502909
Alignment:
Q  287 agatgatgaatgttggagagaaaattgtgatggtggttaatgatttgattttgttt 342  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||  |||||||    
T  37502964 agatgatgaaggttggagagaaaattgtgatggcggttaatgatttggctttgttt 37502909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 33426698 - 33426764
Alignment:
Q  43 ttgcttatatgtgggaaactacaaaaactaatttgataga-tttaattaaattttgcagttattttt 108  Q
    |||||| ||||||||||||||||| ||||||||||| ||| ||||||| || ||||| |||||||||    
T  33426698 ttgcttgtatgtgggaaactacaagaactaatttgacagattttaattgaactttgctgttattttt 33426764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 342
Target Start/End: Original strand, 33427151 - 33427202
Alignment:
Q  291 gatgaatgttggagagaaaattgtgatggtggttaatgatttgattttgttt 342  Q
    ||||||||||||||||||||||| ||||   |||||||||||| ||||||||    
T  33427151 gatgaatgttggagagaaaattgcgatgaccgttaatgatttggttttgttt 33427202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 47815415 - 47815365
Alignment:
Q  43 ttgcttatatgtgggaaactacaaaaactaatttgataga-tttaattaaa 92  Q
    ||||||||| |||||||||||||| ||||||||||| ||| ||||||||||    
T  47815415 ttgcttatacgtgggaaactacaagaactaatttgacagactttaattaaa 47815365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 287 - 338
Target Start/End: Original strand, 53239748 - 53239799
Alignment:
Q  287 agatgatgaatgttggagagaaaattgtgatggtggttaatgatttgatttt 338  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  53239748 agatgatgaatgttggagagaaaattgtgacggtggttaatgatttggtttt 53239799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 39482535 - 39482444
Alignment:
Q  18 aggaatgctactaatatggactaatttgcttatatgtgggaaactacaaaaactaatttgataga-tttaattaaattttgcagttattttt 108  Q
    |||||||||||| | ||| |||||||||||||||| | || |||||||| ||||||||||| | | |||||||||| |||||||||||||||    
T  39482535 aggaatgctactgacatgaactaatttgcttatatctagggaactacaagaactaatttgacaaattttaattaaactttgcagttattttt 39482444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 289 - 342
Target Start/End: Original strand, 28851849 - 28851902
Alignment:
Q  289 atgatgaatgttggagagaaaattgtgatggtggttaatgatttgattttgttt 342  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  28851849 atgataaatgttggagagaaaattgtgatagtggttaatgatttggttttgttt 28851902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 342
Target Start/End: Complemental strand, 39482371 - 39482209
Alignment:
Q  174 aacactaatttgcggttaatgat--ctgcagcaagaaaaagggtatcactcaggcactcacaacactaatttgcagttttgtgttcccagcaagnnnnnn 271  Q
    |||||||||||||||||| ||||  |||||||||||||||||| | |||||| |        ||||||||||| |||||||||||| ||| |||          
T  39482371 aacactaatttgcggttattgatttctgcagcaagaaaaaggggaacactcacg--------acactaatttgtagttttgtgttcgcagaaagaaaaag 39482280  T
Q  272 nggaggttaccttaaagatgatgaatgttggagagaaaattgtgatggtggttaatgatttgattttgttt 342  Q
      |||||||  |   ||||| |||||| || |||||||||||| |||||||||||||||||| ||||||||    
T  39482279 atgaggttaagtctcagatgttgaatgatgaagagaaaattgtaatggtggttaatgatttggttttgttt 39482209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 338
Target Start/End: Original strand, 2170793 - 2170835
Alignment:
Q  296 atgttggagagaaaattgtgatggtggttaatgatttgatttt 338  Q
    ||||| |||||||||||||||||||||||||||||||| ||||    
T  2170793 atgtttgagagaaaattgtgatggtggttaatgatttggtttt 2170835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 21401789 - 21401733
Alignment:
Q  277 gttaccttaaagatgatgaatgttggagagaaaattgtgatggtggttaatgatttg 333  Q
    ||||| || ||||||||||| |||||| ||||||||||||||   ||||||||||||    
T  21401789 gttacatttaagatgatgaaggttggaaagaaaattgtgatgacagttaatgatttg 21401733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University