View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17408_low_42 (Length: 348)

Name: NF17408_low_42
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17408_low_42
NF17408_low_42
[»] chr4 (18 HSPs)
chr4 (6-320)||(27508425-27508739)
chr4 (69-319)||(27503544-27503794)
chr4 (69-318)||(27524146-27524394)
chr4 (69-299)||(27468624-27468855)
chr4 (69-303)||(27475853-27476088)
chr4 (68-300)||(27514505-27514736)
chr4 (6-69)||(27524041-27524104)
chr4 (6-63)||(27503442-27503499)
chr4 (6-67)||(27514410-27514471)
chr4 (16-67)||(27468899-27468950)
chr4 (6-62)||(27489628-27489684)
chr4 (21-65)||(27556962-27557006)
chr4 (6-67)||(27506263-27506324)
chr4 (86-178)||(27517383-27517475)
chr4 (3-67)||(27486460-27486524)
chr4 (16-63)||(27476133-27476180)
chr4 (8-58)||(27497858-27497908)
chr4 (23-67)||(27479400-27479444)


Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 6 - 320
Target Start/End: Original strand, 27508425 - 27508739
Alignment:
Q  6 tggacatcatcattgtcataatgaagaaaacatgtcttcagcatgtttacaaaattatgaaggacatctcatttggtaggaagtggaagctttgtattgg 105  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27508425 tggacatcagcattgtcataatgaagaaaacatgtcttcagcatgtttataaaattatgaaggacatctcatttggtaggaagtggaagctttgtattgg 27508524  T
Q  106 acattgtgtaagaaggtagggtacactctaagacaacaccacatgctaccttatcactatgctctctatccttccaccccttcaataatagtttttctag 205  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27508525 acattgtttaagaaggtagggtacactctaagacagcaccacatgctaccttatcactatgctctctatccttccaccccttcaataatagtttttctag 27508624  T
Q  206 gaattgggttttgagataacttcaaactctataaatacacttcatctctccttcacaaacagcacaactcattagcttcatcaattacttagttacatcc 305  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  27508625 gaattgggttttgagataacttcaaactctataaatacacttcctctctccttcacaaacagcacaactcattagcatcatcaattacttagttacatcc 27508724  T
Q  306 ttcttacttttgata 320  Q
    |||||||||||||||    
T  27508725 ttcttacttttgata 27508739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 69 - 319
Target Start/End: Original strand, 27503544 - 27503794
Alignment:
Q  69 acatctcatttggtaggaagtggaagctttgtattggacattgtgtaagaa-ggtagggtacactctaagacaacaccacatgctaccttatcactatgc 167  Q
    |||||| ||||  ||| ||||||||||||||||||||||||||| || ||| ||||||| ||||||||||||||||||||||||||| ||||| |||||     
T  27503544 acatcttattttttagcaagtggaagctttgtattggacattgtttaggaaaggtaggggacactctaagacaacaccacatgctacattatccctatga 27503643  T
Q  168 tctctatccttccaccccttcaataatagtttttctaggaattgggttttgagataacttcaaactctataaatacacttcatctctccttcacaaacag 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27503644 tctctatccttccaccccttcaataatagtttttctaggaattgggttttgagataacttcaaactctataaatacacttcctctctccttcacaaacag 27503743  T
Q  268 cacaactcattagcttcatcaattacttagttacatccttcttacttttgat 319  Q
    ||||| ||||| || ||||||| |||||| |||||||| |||||| ||||||    
T  27503744 cacaattcatt-gcatcatcaaatacttaattacatccatcttacatttgat 27503794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 69 - 318
Target Start/End: Original strand, 27524146 - 27524394
Alignment:
Q  69 acatctcatttggtaggaagtggaagctttgtattggacattgtgtaagaaggtagggtacactctaagacaacaccacatgctaccttatcactatgct 168  Q
    |||||||||||||||| || |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  27524146 acatctcatttggtagcaattggaagctttgtattggatattgtttaagaaggtagggtacactctaagacaacaccacatgctaccttatccctatgat 27524245  T
Q  169 ctctatccttccaccccttcaataatagtttttctaggaattgggttttgagataacttcaaactctataaatacacttcatctctccttcacaaacagc 268  Q
    || |||||||| ||||||||||||||||||||||| | |||| || ||||||| ||||| ||| |||||| ||| ||||| ||||||||||||||||||     
T  27524246 ctatatccttcaaccccttcaataatagtttttcttgaaatttgggtttgagagaactttaaaatctatatataaacttcctctctccttcacaaacaga 27524345  T
Q  269 acaactcattagcttcatcaattacttagttacatccttcttacttttga 318  Q
    | |||||||| || | ||||| || ||||||||||||||| ||| |||||    
T  27524346 aaaactcatt-gcattatcaaatatttagttacatccttcatacatttga 27524394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 69 - 299
Target Start/End: Complemental strand, 27468855 - 27468624
Alignment:
Q  69 acatctcatttggtaggaagtggaagctttgtattggacatt-gtgtaagaaggtagggtacactctaagacaacaccacatgctaccttatcactatgc 167  Q
    |||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||  |||||||| ||||||    
T  27468855 acatctcatttggtagcaagtggaagctttgtattggacatttgtttaagaaggtagggtacactcttagacaacaccacatgagaccttatccctatgc 27468756  T
Q  168 tctctatccttccaccccttcaataatagtttttctaggaattgggttttgagataacttcaaactctataaatacacttcatctctccttcacaaacag 267  Q
    ||||||||| || | ||||||||||||||||||| | | |||| | |||||||| ||||||||| |||||||||||||||| |||| |||||||||||||    
T  27468755 tctctatccatcaaacccttcaataatagtttttgttgaaatttgattttgagagaacttcaaaatctataaatacacttcctctcgccttcacaaacag 27468656  T
Q  268 cacaactcattagcttcatcaattacttagtt 299  Q
     |||||||||| || ||||||| || ||||||    
T  27468655 gacaactcattggcatcatcaaatatttagtt 27468624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 69 - 303
Target Start/End: Complemental strand, 27476088 - 27475853
Alignment:
Q  69 acatctcatttggtaggaagtggaagctttgtattggacattgtgtaagaa-ggtagggtacactctaagacaacaccacatgctaccttatcactatgc 167  Q
    |||||| ||||  ||| ||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||| |||||||||||||| || |||    
T  27476088 acatcttattttttagcaagtggaagctttgtattggacattgtttaggaaaggtagggtacactctaagacaacaccccatgctaccttatccctgtgc 27475989  T
Q  168 tctctatccttccaccccttcaataatagtttttctaggaattgggttttgagataacttcaaactctataaatacacttcatctctccttcacaaacag 267  Q
    ||||||||| || | ||||||||||||||||| ||| | |||| |||||||||| ||||||||| |||||||||||||||| ||||||||||| ||||||    
T  27475988 tctctatccatcaaacccttcaataatagtttctcttgaaatttggttttgagagaacttcaaaatctataaatacacttcctctctccttcataaacag 27475889  T
Q  268 cacaactcattagcttcatcaattacttagttacat 303  Q
    ||||||| ||| || ||||||| || ||||||||||    
T  27475888 cacaactgattggcatcatcaaatatttagttacat 27475853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 68 - 300
Target Start/End: Original strand, 27514505 - 27514736
Alignment:
Q  68 gacatctcatttggtaggaagtggaagctttgtattggacatt-gtgtaagaaggtagggtacactctaagacaacaccacatgctaccttatcactatg 166  Q
    ||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||  |||||||| |||||    
T  27514505 gacatctcatttggtagcaagtggaagctttgtattggacatttgtttaagaaggtagggtacactcttagacaacaccacatgagaccttatccctatg 27514604  T
Q  167 ctctctatccttccaccccttcaataatagtttttctaggaattgggttttgagataacttcaaactctataaatacacttcatctctccttcacaaaca 266  Q
    |||||||||| || | ||||||||||||||||| ||| | |||| |||| ||||| ||||||||| |||||||||||||||| ||||||||||| ||  |    
T  27514605 ctctctatccatcaaacccttcaataatagtttctcttgaaatttggttctgagagaacttcaaaatctataaatacacttcctctctccttcataa--a 27514702  T
Q  267 gcacaactcattagcttcatcaattacttagtta 300  Q
    |||||||||||| || ||||||| || |||||||    
T  27514703 gcacaactcattggcatcatcaagtatttagtta 27514736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 27524041 - 27524104
Alignment:
Q  6 tggacatcatcattgtcataatgaagaaaacatgtcttcagcatgtttacaaaattatgaagga 69  Q
    ||||||||| |||| ||||||||||||||||||||||  ||||||||||| |||||||||||||    
T  27524041 tggacatcagcattatcataatgaagaaaacatgtctgaagcatgtttacgaaattatgaagga 27524104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 27503442 - 27503499
Alignment:
Q  6 tggacatcatcattgtcataatgaagaaaacatgtcttcagcatgtttacaaaattat 63  Q
    ||||||||| |||| ||||||||||||||||||||||  |||||||||||||||||||    
T  27503442 tggacatcaacattatcataatgaagaaaacatgtctgaagcatgtttacaaaattat 27503499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 27514410 - 27514471
Alignment:
Q  6 tggacatcatcattgtcataatgaagaaaacatgtcttcagcatgtttacaaaattatgaag 67  Q
    ||||||||| |||| |||||||| |||||||||||||  |||||||||||||||||||||||    
T  27514410 tggacatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaag 27514471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 27468950 - 27468899
Alignment:
Q  16 cattgtcataatgaagaaaacatgtcttcagcatgtttacaaaattatgaag 67  Q
    |||| ||||||||||||||||||||||  |||||||||||||||||||||||    
T  27468950 cattatcataatgaagaaaacatgtctgaagcatgtttacaaaattatgaag 27468899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 27489628 - 27489684
Alignment:
Q  6 tggacatcatcattgtcataatgaagaaaacatgtcttcagcatgtttacaaaatta 62  Q
    ||||||||  |||| ||||||||||||||||||||||  ||||||||||||||||||    
T  27489628 tggacatcgacattttcataatgaagaaaacatgtctaaagcatgtttacaaaatta 27489684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 27557006 - 27556962
Alignment:
Q  21 tcataatgaagaaaacatgtcttcagcatgtttacaaaattatga 65  Q
    ||||||||||||||||||||||  |||||||||||||||||||||    
T  27557006 tcataatgaagaaaacatgtctaaagcatgtttacaaaattatga 27556962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 27506263 - 27506324
Alignment:
Q  6 tggacatcatcattgtcataatgaagaaaacatgtcttcagcatgtttacaaaattatgaag 67  Q
    ||||||||| || | | ||||||||||||||||||||  | |||||||||||||||||||||    
T  27506263 tggacatcagcactttgataatgaagaaaacatgtctgaaacatgtttacaaaattatgaag 27506324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 178
Target Start/End: Original strand, 27517383 - 27517475
Alignment:
Q  86 aagtggaagctttgtattggacattgtgtaagaaggtagggtacactc-taagacaacaccacatgctaccttatcactatgctctctatcctt 178  Q
    ||||||||||||||| |||| |||||| | ||||||| ||||||| || ||||||||| ||||||||||  |||||  ||||||||||| ||||    
T  27517383 aagtggaagctttgtgttggccattgtttgagaaggtggggtacaatcttaagacaacgccacatgctatattatc-ttatgctctctaacctt 27517475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 27486524 - 27486460
Alignment:
Q  3 agatggacatcatcattgtcataatgaagaaaacatgtcttcagcatgtttacaaaattatgaag 67  Q
    |||||||||||| || | | ||||||||||||||||||||  | |||||||||| ||||||||||    
T  27486524 agatggacatcaacactttaataatgaagaaaacatgtctgaaacatgtttacacaattatgaag 27486460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 27476180 - 27476133
Alignment:
Q  16 cattgtcataatgaagaaaacatgtcttcagcatgtttacaaaattat 63  Q
    |||| ||||||||||||||||||||||  |||||| ||||||||||||    
T  27476180 cattatcataatgaagaaaacatgtctgaagcatgcttacaaaattat 27476133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 27497908 - 27497858
Alignment:
Q  8 gacatcatcattgtcataatgaagaaaacatgtcttcagcatgtttacaaa 58  Q
    ||||||| |||| ||||||||||||||||||||| | ||| ||||||||||    
T  27497908 gacatcaacattatcataatgaagaaaacatgtcctaagcctgtttacaaa 27497858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 27479444 - 27479400
Alignment:
Q  23 ataatgaagaaaacatgtcttcagcatgtttacaaaattatgaag 67  Q
    ||||||||||||||||||||  | |||||||||| ||||||||||    
T  27479444 ataatgaagaaaacatgtctgaaacatgtttacacaattatgaag 27479400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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