View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17408_low_45 (Length: 333)

Name: NF17408_low_45
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17408_low_45
NF17408_low_45
[»] scaffold0056 (2 HSPs)
scaffold0056 (14-252)||(75193-75431)
scaffold0056 (241-317)||(75094-75170)
[»] chr2 (3 HSPs)
chr2 (111-171)||(6282439-6282499)
chr2 (142-173)||(8241831-8241862)
chr2 (270-302)||(27334681-27334713)
[»] chr1 (5 HSPs)
chr1 (153-196)||(37919754-37919797)
chr1 (214-291)||(42506237-42506314)
chr1 (142-172)||(10884445-10884475)
chr1 (54-90)||(26088636-26088672)
chr1 (121-173)||(33296568-33296620)
[»] chr6 (1 HSPs)
chr6 (141-175)||(26498326-26498360)
[»] chr7 (7 HSPs)
chr7 (154-233)||(23284773-23284852)
chr7 (59-92)||(22199204-22199237)
chr7 (59-92)||(22238584-22238617)
chr7 (101-137)||(7414792-7414828)
chr7 (101-137)||(31266767-31266803)
chr7 (129-189)||(34328619-34328679)
chr7 (121-173)||(38458265-38458317)
[»] chr8 (3 HSPs)
chr8 (54-92)||(15892405-15892443)
chr8 (58-90)||(427947-427979)
chr8 (46-82)||(9944474-9944510)
[»] chr4 (3 HSPs)
chr4 (154-184)||(20394077-20394107)
chr4 (152-201)||(5314393-5314442)
chr4 (121-169)||(32304743-32304791)
[»] chr3 (2 HSPs)
chr3 (143-189)||(45004430-45004476)
chr3 (56-92)||(19405876-19405912)


Alignment Details
Target: scaffold0056 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 75431 - 75193
Alignment:
Q  14 cataggattggtatcttaatagaattatgcctttctctcgacaagttttgctcattcccaaccaaacttctgaaaatactcatgtgtactcacgcatgtg 113  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||  |||||||||||||||| |  |||||||||||||||||    
T  75431 cataggattggtatcttaatagaattatgcctttctctccacaagttttgctcattctcaataaaacttctgaaaataccccggtgtactcacgcatgtg 75332  T
Q  114 ttaattctgcgtgaattaactcacaaatgtgtaaatctctgcgtgagttaactcacgcagatgttaattccaacgttaattaattcaccgagaaatttat 213  Q
    |||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||    
T  75331 ttaattatgcgtgaattaactcacgaatgtgtaaatatctgcgtgagttaactcacgcagatgttaattccaacgtaagttaattcacggagaaatttat 75232  T
Q  214 acatgcgtgagttatctcacgcagaggtaatttggttat 252  Q
    |||| ||||||||||||||| ||||||||||||||||||    
T  75231 acatacgtgagttatctcactcagaggtaatttggttat 75193  T

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Target: scaffold0056; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 241 - 317
Target Start/End: Complemental strand, 75170 - 75094
Alignment:
Q  241 taatttggttatattagttgggaatgaataaaacttattggaagaagagcagaattcgtcctaataaggatcttttt 317  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||    
T  75170 taatttggttattttagttgggaatgaataaaacttattgggagaagagcagaattcatcttaataaggatcttttt 75094  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 6282499 - 6282439
Alignment:
Q  111 gtgttaattctgcgtgaattaactcacaaatgtgtaaatctctgcgtgagttaactcacgc 171  Q
    ||||||||||||||||| |||||||||    |||| |||||||||||||||||||||||||    
T  6282499 gtgttaattctgcgtgacttaactcacgttagtgttaatctctgcgtgagttaactcacgc 6282439  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 173
Target Start/End: Original strand, 8241831 - 8241862
Alignment:
Q  142 gtgtaaatctctgcgtgagttaactcacgcag 173  Q
    ||||||||||||||||||||||||||||||||    
T  8241831 gtgtaaatctctgcgtgagttaactcacgcag 8241862  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 302
Target Start/End: Original strand, 27334681 - 27334713
Alignment:
Q  270 aaaacttattggaagaagagcagaattcgtcct 302  Q
    ||||||| |||||||||||||||||||||||||    
T  27334681 aaaacttgttggaagaagagcagaattcgtcct 27334713  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 196
Target Start/End: Complemental strand, 37919797 - 37919754
Alignment:
Q  153 tgcgtgagttaactcacgcagatgttaattccaacgttaattaa 196  Q
    |||||||||||||||||||||||||||||||| |||| ||||||    
T  37919797 tgcgtgagttaactcacgcagatgttaattcctacgtgaattaa 37919754  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 291
Target Start/End: Complemental strand, 42506314 - 42506237
Alignment:
Q  214 acatgcgtgagttatctcacgcagaggtaatttggttatattagttgggaatgaataaaacttattggaagaagagca 291  Q
    |||||||||||||| |||| ||||||||| ||||| ||  |||||||||||||| | ||||||  ||| |||||||||    
T  42506314 acatgcgtgagttaactcatgcagaggtattttgggtagtttagttgggaatgagtgaaacttgatgggagaagagca 42506237  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 172
Target Start/End: Original strand, 10884445 - 10884475
Alignment:
Q  142 gtgtaaatctctgcgtgagttaactcacgca 172  Q
    |||||||||||||||||||||||||||||||    
T  10884445 gtgtaaatctctgcgtgagttaactcacgca 10884475  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 26088636 - 26088672
Alignment:
Q  54 acaagttttgctcattcccaaccaaacttctgaaaat 90  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  26088636 acaagttttgctcattcccaatcaaacttccgaaaat 26088672  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 33296620 - 33296568
Alignment:
Q  121 tgcgtgaattaactcacaaatgtgtaaatctctgcgtgagttaactcacgcag 173  Q
    ||||||| |||||||||  |||||| ||| |||||||||||||||| ||||||    
T  33296620 tgcgtgagttaactcacgcatgtgttaatgtctgcgtgagttaactaacgcag 33296568  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 175
Target Start/End: Original strand, 26498326 - 26498360
Alignment:
Q  141 tgtgtaaatctctgcgtgagttaactcacgcagat 175  Q
    |||||||||||||||||||||||||||||||||||    
T  26498326 tgtgtaaatctctgcgtgagttaactcacgcagat 26498360  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 233
Target Start/End: Original strand, 23284773 - 23284852
Alignment:
Q  154 gcgtgagttaactcacgcagatgttaattccaacgttaattaattcaccgagaaatttatacatgcgtgagttatctcac 233  Q
    |||||||||||||||||||| ||||||||||| ||| | |||| |||   ||| ||| | |||||||||||||| |||||    
T  23284773 gcgtgagttaactcacgcaggtgttaattccagcgtgagttaaatcatgcagagattaacacatgcgtgagttaactcac 23284852  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 92
Target Start/End: Complemental strand, 22199237 - 22199204
Alignment:
Q  59 ttttgctcattcccaaccaaacttctgaaaatac 92  Q
    |||||||||||||||||||||| |||||||||||    
T  22199237 ttttgctcattcccaaccaaacatctgaaaatac 22199204  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 92
Target Start/End: Original strand, 22238584 - 22238617
Alignment:
Q  59 ttttgctcattcccaaccaaacttctgaaaatac 92  Q
    |||||||||||||||||||||| |||||||||||    
T  22238584 ttttgctcattcccaaccaaacatctgaaaatac 22238617  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 7414828 - 7414792
Alignment:
Q  101 actcacgcatgtgttaattctgcgtgaattaactcac 137  Q
    |||||| |||||||||||||||||||| |||||||||    
T  7414828 actcacacatgtgttaattctgcgtgagttaactcac 7414792  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 31266767 - 31266803
Alignment:
Q  101 actcacgcatgtgttaattctgcgtgaattaactcac 137  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  31266767 actcacgcatgtgttaatcctgcgtgaattaagtcac 31266803  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 34328679 - 34328619
Alignment:
Q  129 ttaactcacaaatgtgtaaatctctgcgtgagttaactcacgcagatgttaattccaacgt 189  Q
    |||||||||| | |||| |||  | |||||||||||||||||||  |||||||||||||||    
T  34328679 ttaactcacacaagtgttaattccagcgtgagttaactcacgcaagtgttaattccaacgt 34328619  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 38458265 - 38458317
Alignment:
Q  121 tgcgtgaattaactcacaaatgtgtaaatctctgcgtgagttaactcacgcag 173  Q
    ||||||| |||||||||  |||||  ||| |||||||||||||||||||||||    
T  38458265 tgcgtgagttaactcacgcatgtgctaatgtctgcgtgagttaactcacgcag 38458317  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 92
Target Start/End: Original strand, 15892405 - 15892443
Alignment:
Q  54 acaagttttgctcattcccaaccaaacttctgaaaatac 92  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  15892405 acaagatttgctcactcccaaccaaacttctgaaaatac 15892443  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 427947 - 427979
Alignment:
Q  58 gttttgctcattcccaaccaaacttctgaaaat 90  Q
    |||||||||||||||||||||||||| ||||||    
T  427947 gttttgctcattcccaaccaaacttccgaaaat 427979  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 9944474 - 9944510
Alignment:
Q  46 ttctctcgacaagttttgctcattcccaaccaaactt 82  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  9944474 ttctctcaacaagttttgctcatttccaaccaaactt 9944510  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 184
Target Start/End: Original strand, 20394077 - 20394107
Alignment:
Q  154 gcgtgagttaactcacgcagatgttaattcc 184  Q
    |||||||||||||||||||||||||||||||    
T  20394077 gcgtgagttaactcacgcagatgttaattcc 20394107  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 5314442 - 5314393
Alignment:
Q  152 ctgcgtgagttaactcacgcagatgttaattccaacgttaattaattcac 201  Q
    |||||||||||||||||||||  ||||||||||| ||| |||||| ||||    
T  5314442 ctgcgtgagttaactcacgcaagtgttaattccagcgtgaattaactcac 5314393  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 32304743 - 32304791
Alignment:
Q  121 tgcgtgaattaactcacaaatgtgtaaatctctgcgtgagttaactcac 169  Q
    ||||||| |||||||||| |||||| ||| || ||||||||||||||||    
T  32304743 tgcgtgagttaactcacacatgtgttaatttcagcgtgagttaactcac 32304791  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 45004430 - 45004476
Alignment:
Q  143 tgtaaatctctgcgtgagttaactcacgcagatgttaattccaacgt 189  Q
    |||||||  |||||||||||||||||||||  |||||||||||||||    
T  45004430 tgtaaattcctgcgtgagttaactcacgcaagtgttaattccaacgt 45004476  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 19405912 - 19405876
Alignment:
Q  56 aagttttgctcattcccaaccaaacttctgaaaatac 92  Q
    |||||| |||||||||||||||||||||| |||||||    
T  19405912 aagtttcgctcattcccaaccaaacttctcaaaatac 19405876  T

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