View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_low_46 (Length: 329)
Name: NF17408_low_46
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 321
Target Start/End: Complemental strand, 51214323 - 51214019
Alignment:
| Q |
17 |
aagcacattgtgtaaggcacaaacctttgcgtctgtgctgaatccttgcatggccgtgatttgaaaatatccatttactaatagtagaggcaacaaaaca |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51214323 |
aagcacattgtgtaaggcacaaacctttgcgtctgtgctgaatccttgcatggccttgatttgaaaatatccatttactaatagtagaggcaacaaaaca |
51214224 |
T |
|
| Q |
117 |
agaatgatgagagaaagctgccaatttgcctgaaaggaaattaccaaggctgtaataactgtagagatatcttgaacaagcaaaccgagtgcgtcaccaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51214223 |
agaatgatgagagaaagctgccaatttgcctgaaaggaaattaccaaggctgtaataactgtagagatatcttgaacaagcaaaccgagtgcgtcaccaa |
51214124 |
T |
|
| Q |
217 |
ccaaagttcgaatcaaagcagcagcagttgacagcctttcacccagcgcaccacttgaattctcagcgttatcaaaccagcctacttccatgtgaattat |
316 |
Q |
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|||||||||||||| |||||||| |||||||||||||| |||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
51214123 |
ccaaagttcgaatcgaagcagcatcagttgacagccttgcaccaagcgcaccacttgaattctcagctttatcaaaccatcctacttccatgtgaattat |
51214024 |
T |
|
| Q |
317 |
attct |
321 |
Q |
| |
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|||| |
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| T |
51214023 |
tttct |
51214019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 29 - 321
Target Start/End: Original strand, 49735799 - 49736091
Alignment:
| Q |
29 |
taaggcacaaacctttgcgtctgtgctgaatccttgcatggccgtgatttgaaaatatccatttactaatagtagaggcaacaaaacaagaatgatgaga |
128 |
Q |
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||||||||||||| |||| |||||||||||||||||||||| ||||||| |||| |||||||||||| |||||||| | ||||||||||||||||||| |
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| T |
49735799 |
taaggcacaaacccttgcatctgtgctgaatccttgcatggatttgatttgtaaatgtccatttactaacagtagaggtagcaaaacaagaatgatgaga |
49735898 |
T |
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| Q |
129 |
gaaagctgccaatttgcctgaaaggaaattaccaaggctgtaataactgtagagatatcttgaacaagcaaaccgagtgcgtcaccaaccaaagttcgaa |
228 |
Q |
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||||||||||| | | || |||| |||||||||||||||||| || || | ||||||||||| |||||||||||||| || |||||||||||||||| |
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| T |
49735899 |
gaaagctgccagctagtctcaaagccaattaccaaggctgtaattacagtggcaatatcttgaactagcaaaccgagtgcatccccaaccaaagttcgaa |
49735998 |
T |
|
| Q |
229 |
tcaaagcagcagcagttgacagcctttcacccagcgcaccacttgaattctcagcgttatcaaaccagcctacttccatgtgaattatattct |
321 |
Q |
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|| |||||||| | |||||||||||| |||| || |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||| |
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| T |
49735999 |
tcgaagcagcatcggttgacagccttgcaccaagtgcaccacttgaattctcagctttatcaaaccatcctacttccatgtgaattattttct |
49736091 |
T |
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