View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17408_low_52 (Length: 303)
Name: NF17408_low_52
Description: NF17408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17408_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 54182119 - 54182069
Alignment:
| Q |
94 |
gtaatacatttaattagaaaataagttgatcccaatacttatttcttcttc |
144 |
Q |
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| T |
54182119 |
gtaatacatttaattagaaaataagttgatcccaatacttatttcttcttc |
54182069 |
T |
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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 300
Target Start/End: Complemental strand, 54181957 - 54181911
Alignment:
| Q |
254 |
aggaaatgttaattaaaagttaatatttttatatttgcactaacata |
300 |
Q |
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| T |
54181957 |
aggaaatgttaattaaaagttaatatttttatatttgtactaacata |
54181911 |
T |
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